View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9366-LTR4-TNT-insertion-1 (Length: 53)
Name: F9366-LTR4-TNT-insertion-1
Description: F9366-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9366-LTR4-TNT-insertion-1 |
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| [»] scaffold0339 (2 HSPs) |
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| [»] scaffold1472 (1 HSPs) |
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Alignment Details
Target: scaffold0339 (Bit Score: 38; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0339
Description:
Target: scaffold0339; HSP #1
Raw Score: 38; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 2019 - 2056
Alignment:
| Q |
7 |
accaaccagccctgtcaaagaggtccacttctcaattg |
44 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
2019 |
accaaccagccctgtcaaagaggtccacttctcaattg |
2056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0339; HSP #2
Raw Score: 34; E-Value: 0.00000000005
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 17213 - 17176
Alignment:
| Q |
7 |
accaaccagccctgtcaaagaggtccacttctcaattg |
44 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |
|
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| T |
17213 |
accaaccagccctgtcaacgaggtccacttctcaattg |
17176 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 47272794 - 47272831
Alignment:
| Q |
7 |
accaaccagccctgtcaaagaggtccacttctcaattg |
44 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47272794 |
accaaccagccctgtcaaagaggtccacttctcaattg |
47272831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1472 (Bit Score: 34; Significance: 0.00000000005; HSPs: 1)
Name: scaffold1472
Description:
Target: scaffold1472; HSP #1
Raw Score: 34; E-Value: 0.00000000005
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 929 - 892
Alignment:
| Q |
7 |
accaaccagccctgtcaaagaggtccacttctcaattg |
44 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
929 |
accaaccagccctgtcaacgaggtccacttctcaattg |
892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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