View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9366-LTR4-TNT-insertion-2 (Length: 398)
Name: F9366-LTR4-TNT-insertion-2
Description: F9366-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9366-LTR4-TNT-insertion-2 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 375; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 10 - 388
Target Start/End: Complemental strand, 32709229 - 32708851
Alignment:
| Q |
10 |
atgtaagatggagtacattgttgattgttgttgattggtgattatttaggttccggagaatgtgaacaacaataagggcaacatttacatggctcgtaca |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32709229 |
atgtaagatggagtacattgttgattgttgttgattggtgattatttaggttccggagaatgtgaacaacaataagggcaacatttacatggctcgtaca |
32709130 |
T |
|
| Q |
110 |
agcccctcaaatgtacttactgcgtactacaaccaatttcaaagtgatttttctctttttctcaagtgtcgtgcaaaggaagtagttgaaggtggtcgca |
209 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32709129 |
agcccctcaaatgtacttactgcgtactacaaccaatttcaaagtgatttttctctttttctcaagtgtcgtgcaaaggaagtagttgaaggtggtcgca |
32709030 |
T |
|
| Q |
210 |
tgattctaacatttttaggaagaaaaagtgacaagaagtatagcaaggagtgttgctacatttgggaacttatggctatagctcttaatgacatggtctt |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32709029 |
tgattctaacatttttaggaagaaaaagtgacaagaagtatagcaaggagtgttgctacatttgggaacttatggctatagctcttaatgatatggtctt |
32708930 |
T |
|
| Q |
310 |
gcaggtaaattgtgacatcctaaatataatgtgttagtgttgatatttgatcatgcgtcactactagatagatcgaatt |
388 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32708929 |
gcaggtaaattgtgacatcctaaatataatgtgttagtgttgatatttgatcatgcgtcactactagatagatcgaatt |
32708851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 37 - 318
Target Start/End: Complemental strand, 32627621 - 32627340
Alignment:
| Q |
37 |
ttgttgattggtgattatttaggttccggagaatgtgaacaacaataagggcaacatttacatggctcgtacaagcccctcaaatgtacttactgcgtac |
136 |
Q |
| |
|
||||||||||||||||| ||||||||| ||| || ||||||| |||||||||||||| || | | |||||||||| ||||| | | || ||| |
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|
| T |
32627621 |
ttgttgattggtgattaattaggttcctgagggtgcagacaacaacaagggcaacatttatatatccagcacaagccccttgaatgtcgtcaaggcttac |
32627522 |
T |
|
| Q |
137 |
tacaaccaatttcaaagtgatttttctctttttctcaagtgtcgtgcaaaggaagtagttgaaggtggtcgcatgattctaacatttttaggaagaaaaa |
236 |
Q |
| |
|
||||| ||||| |||| ||||| ||||||||||||||||||||||| | ||| |||||||||| ||| |||||||| |||||||| |||||||||||| |
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| T |
32627521 |
tacaagcaattccaaatagatttctctctttttctcaagtgtcgtgccgaagaaatagttgaagggggttgcatgattataacatttgtaggaagaaaaa |
32627422 |
T |
|
| Q |
237 |
gtgacaagaagtatagcaaggagtgttgctacatttgggaacttatggctatagctcttaatgacatggtcttgcaggtaaa |
318 |
Q |
| |
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| ||||| |||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||| ||||||| |
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|
| T |
32627421 |
gcgacaatccaacaagcaaggagtgttgttacatttgggaacttttggctatggctcttaatgacatggtcttggaggtaaa |
32627340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 251 - 318
Target Start/End: Complemental strand, 32703557 - 32703490
Alignment:
| Q |
251 |
agcaaggagtgttgctacatttgggaacttatggctatagctcttaatgacatggtcttgcaggtaaa |
318 |
Q |
| |
|
||||| |||||||| ||| |||||||| |||||||||| | ||||||||| ||||||||||||||||| |
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|
| T |
32703557 |
agcaaagagtgttgttacgtttgggaagttatggctatgggtcttaatgaaatggtcttgcaggtaaa |
32703490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 165 - 220
Target Start/End: Complemental strand, 7297634 - 7297579
Alignment:
| Q |
165 |
tttttctcaagtgtcgtgcaaaggaagtagttgaaggtggtcgcatgattctaaca |
220 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||| ||| ||||| |||||||| |
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|
| T |
7297634 |
tttttctcaagtgtcgtgcagaggaactagttgaagggggttgcatggttctaaca |
7297579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 134 - 219
Target Start/End: Complemental strand, 7292630 - 7292545
Alignment:
| Q |
134 |
tactacaaccaatttcaaagtgatttttctctttttctcaagtgtcgtgcaaaggaagtagttgaaggtggtcgcatgattctaac |
219 |
Q |
| |
|
|||||| | ||||||||||| || || || |||||||||||||||| ||||||||| | |||||||| |||||||| ||||||| |
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|
| T |
7292630 |
tactacgagcaatttcaaagagacttgtcgatttttctcaagtgtcgcgcaaaggaattggttgaagggggtcgcattgttctaac |
7292545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 75 - 316
Target Start/End: Complemental strand, 5811208 - 5810967
Alignment:
| Q |
75 |
acaacaataagggcaacatttacatggctcgtacaagcccctcaaatgtacttactgcgtactacaaccaatttcaaagtgatttttctctttttctcaa |
174 |
Q |
| |
|
||||||| ||||||||||||||| || | | ||||||||||||||||| | | || |||||||| |||||||||| ||||| ||| |||||||||| |
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| T |
5811208 |
acaacaacaagggcaacatttacctgacgagcacaagcccctcaaatgtccacaaggcttactacaagcaatttcaaacagatttctctttttttctcaa |
5811109 |
T |
|
| Q |
175 |
gtgtcgtgcaaaggaagtagttgaaggtggtcgcatgattctaacatttttaggaagaaaaagtgaca-agaagtat--agcaaggagtgttgctacatt |
271 |
Q |
| |
|
||||||||| | ||| ||||||||||||||| |||||||||||||||||||||| |||||| ||| || || |||||||||| | | |||||| |
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|
| T |
5811108 |
gtgtcgtgccgaagaactagttgaaggtggtcacatgattctaacatttttaggacgaaaaa---acagtgatccatcaagcaaggagtctggttacatt |
5811012 |
T |
|
| Q |
272 |
tgggaacttatggctatagctcttaatgacatggtcttgcaggta |
316 |
Q |
| |
|
|||||||| |||||||| ||||||||||| ||||| ||||||||| |
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|
| T |
5811011 |
tgggaactcatggctatggctcttaatgatatggttttgcaggta |
5810967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 75 - 316
Target Start/End: Complemental strand, 27736481 - 27736240
Alignment:
| Q |
75 |
acaacaataagggcaacatttacatggctcgtacaagcccctcaaatgtacttactgcgtactacaaccaatttcaaagtgatttttctctttttctcaa |
174 |
Q |
| |
|
||||||| ||||| ||||||||| || | | |||||||||||||| || | | || |||||||| ||||||| || ||||| ||| ||||||| |
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|
| T |
27736481 |
acaacaacaagggaaacatttacctgacgagcacaagcccctcaaacgtcatcaaggcttactacaagcaatttcgaacagatttctctttttttcttcg |
27736382 |
T |
|
| Q |
175 |
gtgtcgtgcaaaggaagtagttgaaggtggtcgcatgattctaacatttttaggaagaaaaagtgacaagaagtatagcaaggagtgttgctacatttgg |
274 |
Q |
| |
|
|||||||| || ||| |||||||||| | || |||||||||||| |||||||||| ||| | ||||| | |||||||||||||| ||||||||| |
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|
| T |
27736381 |
atgtcgtgccaaagaattagttgaaggagctcaaatgattctaacacttttaggaaggaaatgcgacaatccatcaagcaaggagtgttgttacatttgg |
27736282 |
T |
|
| Q |
275 |
gaacttatggctatagctcttaatgacatggtcttgcaggta |
316 |
Q |
| |
|
||||| |||||||| || |||||||| ||||||||||||||| |
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|
| T |
27736281 |
gaactcatggctatggcccttaatgatatggtcttgcaggta |
27736240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 80 - 316
Target Start/End: Original strand, 8030405 - 8030641
Alignment:
| Q |
80 |
aataagggcaacatttacatggctcgtacaagcccctcaaatgtacttactgcgtactacaaccaatttcaaagtgatttttctctttttctcaagtgtc |
179 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||| |||| || || | || ||| | | ||||||||||| ||||| || | ||||||||||||| |
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|
| T |
8030405 |
aataagggtaacatttacatggctaccacaagccccgcaaacgtgctcaacgcttaccatgagcaatttcaaagagatttctcattgtttctcaagtgtc |
8030504 |
T |
|
| Q |
180 |
gtgcaaaggaagtagttgaaggtggtcgcatgattctaacatttttaggaagaaaaagtgacaagaagtatagcaaggagtgttgctacatttgggaact |
279 |
Q |
| |
|
||||| | ||| | ||||| || ||||| ||| |||| ||| | || |||||||||||||| | || |||||||| ||||||||||| |||||||| || |
|
|
| T |
8030505 |
gtgcagaagaacttgttgacgggggtcgtatggttctcacaatcttgggaagaaaaagtgatgataaatatagcaaagagtgttgctatatttgggagct |
8030604 |
T |
|
| Q |
280 |
tatggctatagctcttaatgacatggtcttgcaggta |
316 |
Q |
| |
|
| | ||| | || |||||||||||||||||| ||||| |
|
|
| T |
8030605 |
tcttgctgttgcccttaatgacatggtcttggaggta |
8030641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 75 - 232
Target Start/End: Complemental strand, 21943316 - 21943159
Alignment:
| Q |
75 |
acaacaataagggcaacatttacatggctcgtacaagcccctcaaatgtacttactgcgtactacaaccaatttcaaagtgatttttctctttttctcaa |
174 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||||||||| | | || ||||| | |||||||| || ||||| ||||||||||| || |
|
|
| T |
21943316 |
acaacaataagggcaacatttacttggcgaccacaagcccctcaaatgtcttcaaggcttactatgagcaatttcatagagatttatctctttttctaaa |
21943217 |
T |
|
| Q |
175 |
gtgtcgtgcaaaggaagtagttgaaggtggtcgcatgattctaacatttttaggaaga |
232 |
Q |
| |
|
||||||||| | ||| |||||||||| ||| ||||| || |||||||||||| |||| |
|
|
| T |
21943216 |
gtgtcgtgcccaagaactagttgaagggggttgcatggttataacatttttagtaaga |
21943159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 37 - 240
Target Start/End: Original strand, 20116531 - 20116734
Alignment:
| Q |
37 |
ttgttgattggtgattatttaggttccggagaatgtgaacaacaataagggcaacatttacatggctcgtacaagcccctcaaatgtacttactgcgtac |
136 |
Q |
| |
|
|||| ||| |||||||| ||||||||| | |||||||||||| |||||||| |||||||| || |||||||| |||||||| | | || || |
|
|
| T |
20116531 |
ttgtcgatcggtgattaattaggttcccaatggtgtgaacaacaacaagggcaatatttacatagcgaacacaagcccatcaaatgtcttcaaggcatat |
20116630 |
T |
|
| Q |
137 |
tacaaccaatttcaaagtgatttttctctttttctcaagtgtcgtgcaaaggaagtagttgaaggtggtcgcatgattctaacatttttaggaagaaaaa |
236 |
Q |
| |
|
|| | ||||||| | |||||| ||||||||||||||||||||||| || ||| | |||||||| ||| |||||||||| |||||| |||||||| ||| |
|
|
| T |
20116631 |
tatgaacaatttcgtattgatttctctctttttctcaagtgtcgtgccaaagaattggttgaaggaggttgcatgattctgacatttataggaagagaaa |
20116730 |
T |
|
| Q |
237 |
gtga |
240 |
Q |
| |
|
|||| |
|
|
| T |
20116731 |
gtga |
20116734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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