View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9366-LTR4-TNT-insertion-3 (Length: 669)
Name: F9366-LTR4-TNT-insertion-3
Description: F9366-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9366-LTR4-TNT-insertion-3 |
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Alignment Details
Target: chr5 (Bit Score: 606; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 606; E-Value: 0
Query Start/End: Original strand, 9 - 659
Target Start/End: Original strand, 2943439 - 2944089
Alignment:
| Q |
9 |
gatggaggtactatgctgaaccatttggtcaacttcagcatattgnnnnnnnaccattccagttgtatagtttcattgatcttcaagtttaggtatttaa |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2943439 |
gatggaggtactatgctgaaccatttggtcaacttcagcatattgtttttttaccattccagttgtatagtttcattgatcttcaagtttaggtatttaa |
2943538 |
T |
|
| Q |
109 |
tttttattgaacactgttcaggagcaatttttgatcatgaagccaaatgagattacaacccgatcattcaaaatttacccaagcaccgaccaagcttcca |
208 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2943539 |
tttttattgaacactgttcaggagcaatttttgatcatgaagccaaatgagattacaacccgatcattcaaaatttacccaagcaccgaccaagcttcca |
2943638 |
T |
|
| Q |
209 |
aatattcctgtgcaggtaaagttgaagcttaatatattgttatttctgacatgtatacagaaaatgttgatgtttatattatgagtannnnnnnnggtgt |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2943639 |
aatattcctgtgcaggtaaagttgaagcttaatatattgttatttctgacatgtatacagaaaatgttgatgtttatattatgagtattttttttggtgt |
2943738 |
T |
|
| Q |
309 |
tgttaatgaagccatattgaaggattctgattatggtgaagttgatagagctgagtgtcagtttactaccactggaactgttcttgacaatggaacacag |
408 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2943739 |
tgttaatgaagccatattgaaggattctgattatggtgaagttgatagagctgagtgtcagtttactaccactggaactgttcttgacaatggaacacag |
2943838 |
T |
|
| Q |
409 |
gtttgtttcttcctgcgtatagaaaattttaagtctttattctcttatgaaatgaaaacagtagtattgtttaatttgatcaatgttgactcacctagtg |
508 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2943839 |
gtttgtttcttcctgcgtatagaaaattttaagtctttattctcttatgaaatgaaaacagtagtattgtttaatttgatcaatgttgactcacctagtg |
2943938 |
T |
|
| Q |
509 |
ggaacaggctttggttattgtattttcgtattcaaagcagtatacttttgttatgatgtttcttaaaatcattaatggttcaaattataagaaaaaagtg |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2943939 |
ggaacaggctttggttattgtattttcgtattcaaagcagtatacttttgttatgatgtttcttaaaatcattaatggttcaaattataagaaaaaagtg |
2944038 |
T |
|
| Q |
609 |
ttttcctctctaaaataaggatggaacttggtgtatgtgtatgggtgaatt |
659 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2944039 |
ttttcctctctaaaataaggatggaacttggtgtatgtgtatgggtgaatt |
2944089 |
T |
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