View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9366-LTR4-TNT-insertion-4 (Length: 501)
Name: F9366-LTR4-TNT-insertion-4
Description: F9366-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9366-LTR4-TNT-insertion-4 |
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| [»] scaffold0125 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 1e-85; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 8 - 168
Target Start/End: Complemental strand, 10659994 - 10659834
Alignment:
| Q |
8 |
cagttatcacttccaagtgacaagtttttaaaaagcctagacaaaacaataacttccaagtgacaaaatcctcaatttgtgagctgtaaactaagaaagt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10659994 |
cagttatcacttccaagtgacaagtttttaaaaagcctagacaaaacaataacttccaagtgacaaaatcctcaatttgtgagctgtaaactaagaaagt |
10659895 |
T |
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| Q |
108 |
gacttacgagccaaatattagggatttgagataggggtttgtgatatgtttgaaagaattc |
168 |
Q |
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| T |
10659894 |
gacttacgagccaaatattagggatttgagataggggtttgtgatatgtttgaaagaattc |
10659834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 8 - 168
Target Start/End: Complemental strand, 10874139 - 10873979
Alignment:
| Q |
8 |
cagttatcacttccaagtgacaagtttttaaaaagcctagacaaaacaataacttccaagtgacaaaatcctcaatttgtgagctgtaaactaagaaagt |
107 |
Q |
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| T |
10874139 |
cagttatcacttccaagtgacaagtttttaaaaagcctagacaaaacaataacttccaagtgacaaaatcctcaatttgtgagctgtaaactaagaaagt |
10874040 |
T |
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| Q |
108 |
gacttacgagccaaatattagggatttgagataggggtttgtgatatgtttgaaagaattc |
168 |
Q |
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| T |
10874039 |
gacttacgagccaaatattagggatttgagataggggtttgtgatatgtttgaaagaattc |
10873979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 409 - 493
Target Start/End: Complemental strand, 10659593 - 10659508
Alignment:
| Q |
409 |
tggtggtggtattttttgtctttctaactaaatattttgtttcctc-nnnnnnnnnctaaataattttttcttaaatatacaatta |
493 |
Q |
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| T |
10659593 |
tggtggtggtattttttgtctttctaactaaatattttgtttcctcaaaaaaaaaactaaataattttttcttaaatatacaatta |
10659508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 409 - 493
Target Start/End: Complemental strand, 10873738 - 10873653
Alignment:
| Q |
409 |
tggtggtggtattttttgtctttctaactaaatattttgtttcctc-nnnnnnnnnctaaataattttttcttaaatatacaatta |
493 |
Q |
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| T |
10873738 |
tggtggtggtattttttgtctttctaactaaatattttgtttcctcaaaaaaaaaactaaataattttttcttaaatatacaatta |
10873653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0125 (Bit Score: 86; Significance: 7e-41; HSPs: 1)
Name: scaffold0125
Description:
Target: scaffold0125; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 8 - 168
Target Start/End: Original strand, 20313 - 20470
Alignment:
| Q |
8 |
cagttatcacttccaagtgacaagtttttaaaaagcctagacaaaacaataacttccaagtgacaaaatcctcaatttgtgagctgtaaactaagaaagt |
107 |
Q |
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| T |
20313 |
cagttatcacttccaagtgacaattttggaagaagcctagacaaaaccctaacctccaagtgacaaaatcttcaatttgtgagctgcaatctaag--agg |
20410 |
T |
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| Q |
108 |
gacttacgagccaaatattagggatttgagataggggtttgtgatatgtttgaaagaattc |
168 |
Q |
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| T |
20411 |
gatttacgagcc-aatattagggatttaagagaggggtttgtgatatgtttgaaagaattc |
20470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 8 - 162
Target Start/End: Complemental strand, 21843532 - 21843381
Alignment:
| Q |
8 |
cagttatcacttccaagtgacaagtttttaaaaagcctagacaaaacaataacttccaagtgacaaaatcctcaatttgtgagctgtaaactaagaaagt |
107 |
Q |
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||||||||||||||||||||||| |||| || |||| |||||||||| |||| |||||||||||||||| ||||||||||||||| || ||||| || |
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| T |
21843532 |
cagttatcacttccaagtgacaatttttgaagaagcatagacaaaaccctaacctccaagtgacaaaatcttcaatttgtgagctgcaatctaag--agg |
21843435 |
T |
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| Q |
108 |
gacttacgagccaaatattagggatttgagataggggtttgtgatatgtttgaaa |
162 |
Q |
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| T |
21843434 |
gatttacgagcc-aatgttagggatttaagagaggggtttgcgatatgtttgaaa |
21843381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 168
Target Start/End: Original strand, 12818736 - 12818859
Alignment:
| Q |
47 |
gacaaaacaataacttccaagtgacaaaatcctcaatttgtgagctg-taaactaagaaagtgacttacgagc-caaatattagggatttgagatagggg |
144 |
Q |
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|||||||| |||||||||||||| |||||||||||||||||||||| |||||| || || || || |||| ||||||||| |||| |||| ||||| |
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| T |
12818736 |
gacaaaaccctaacttccaagtgagaaaatcctcaatttgtgagctgttaaactttgacagggatttgtgagctaaaatattagcgattcgagagagggg |
12818835 |
T |
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| Q |
145 |
tttgtgatatgtttgaaagaattc |
168 |
Q |
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|||| |||| ||||||||||||| |
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| T |
12818836 |
tttgcgataattttgaaagaattc |
12818859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 115 - 168
Target Start/End: Complemental strand, 8721996 - 8721943
Alignment:
| Q |
115 |
gagccaaatattagggatttgagataggggtttgtgatatgtttgaaagaattc |
168 |
Q |
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|||||||||||||||||||||||| |||| |||| ||||| | ||||||||||| |
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| T |
8721996 |
gagccaaatattagggatttgagagagggatttgcgatatctgtgaaagaattc |
8721943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 449
Target Start/End: Complemental strand, 19948274 - 19948245
Alignment:
| Q |
420 |
ttttttgtctttctaactaaatattttgtt |
449 |
Q |
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| T |
19948274 |
ttttttgtctttctaactaaatattttgtt |
19948245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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