View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9366-LTR4-TNT-insertion-5 (Length: 349)
Name: F9366-LTR4-TNT-insertion-5
Description: F9366-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9366-LTR4-TNT-insertion-5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 9 - 339
Target Start/End: Complemental strand, 38942429 - 38942099
Alignment:
| Q |
9 |
cttgcagggacacaatccactctaagtggtatgccagtggatgtgcttgcagctacattcaacatggacaggaatgaggcgaggcagctcaaaaacaaca |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
38942429 |
cttgcagggacacaatccactctaagtggtatgccagtggatgtgcttgcagctacattcaacatggacaggaatgaggcaaggcagctcaaaaacaaca |
38942330 |
T |
|
| Q |
109 |
atctctttaaatttctagttccaccccgtgagtccgaacgcagagctgcagcttagaaacaaacaccgtttctaaggctttttgcatgctgagacatgta |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38942329 |
atctctttaaatttctagttccaccccgtgagtccgaacgcagagctgcagcttagaaacaaacaccgtttctaaggctttttgcatgctgagacatgta |
38942230 |
T |
|
| Q |
209 |
tcccacacaagtggttaataataatgaatnnnnnnncaaaggcttagatgccttttgaagttatgtatgtgtaagtactgtatctgagtcatgaaccttt |
308 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38942229 |
tcccacacaagtggttaataataatgaataaaaaaacaaaggcttagatgccttttgaagttatgtatgtgtaagtactgtatctgagtcatgaaccttt |
38942130 |
T |
|
| Q |
309 |
ttcggaaatgaataaagtacaagttaaatta |
339 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
38942129 |
ttcggaaatgaataaagtacaagttaaatta |
38942099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 9 - 163
Target Start/End: Complemental strand, 38949865 - 38949711
Alignment:
| Q |
9 |
cttgcagggacacaatccactctaagtggtatgccagtggatgtgcttgcagctacattcaacatggacaggaatgaggcgaggcagctcaaaaacaaca |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
38949865 |
cttgcagggacacaatccactctaagtggtgtgccaatggatgtgcttgcagctacatacaacatggacaggaatgaggcaaggcagctcaagaacaaca |
38949766 |
T |
|
| Q |
109 |
atctctttaaatttctagttccaccccgtgagtccgaacgcagagctgcagctta |
163 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38949765 |
atctctataaatttctagttccaccccgtgagtccgaacgcagagctgcagctta |
38949711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 460 times since January 2019
Visitors: 980