View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9366-LTR4-TNT-insertion-6 (Length: 529)
Name: F9366-LTR4-TNT-insertion-6
Description: F9366-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9366-LTR4-TNT-insertion-6 |
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Alignment Details
Target: chr4 (Bit Score: 498; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 10 - 519
Target Start/End: Original strand, 3028483 - 3028992
Alignment:
| Q |
10 |
gacatgataattatatacagattaaatagaagatatacataaaacgaagcaaataagtgaacgggatgataaagaaacgttaacaaaccttcagtatctg |
109 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3028483 |
gacatgataattatatgcagattaaatagaagatatacataaaacgaagcaaataagtgaacgggatgataaagaaacgttaacaaaccttcagtatctg |
3028582 |
T |
|
| Q |
110 |
gtggggtagaagttccaggaggagacttgtgagacaaggtattgtggtgatccttaggggtagcatcaaggaatgtcagcagaccctaaaacaaagttta |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3028583 |
gtggggtagaagttccaggaggagacttgtgagacaaggtattgtggtgatccttaggagtagcatcaaggaatgtcagcagaccctaaaacaaagttta |
3028682 |
T |
|
| Q |
210 |
gcagtaagaaatattattaaaaaacaagagaggccaaccaagatttatgtgtgaatagcgaatgtttgattgatacatacttctaataaagtttgaggtt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3028683 |
gcagtaagaaatattattaaaaaacaagagaggccaaccaagatttatgtgtgaatagtgaatgtttgattgatacatacttctaataaagtttgaggtt |
3028782 |
T |
|
| Q |
310 |
gaactagtccttcccaagagtgcatgttttggccagtgatgggatgaataataagcacaacaggaattgaattgagtttgtaataagtgcatagtttttt |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3028783 |
gaactagtccttcccaagagtgcatgttttggccagtgatgggatgaataataagcacaacaggaattgaattgagtttgtaataagtgcatagtttttt |
3028882 |
T |
|
| Q |
410 |
gcctttagttgtatcatcatatacttgcaagaatatgaagtttgtagtaatgatctgagaaacagcatcatttgtccatgtatcccgattaagcataagt |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3028883 |
gcctttagttgtatcatcatatacttgcaagaatatgaagtttgtagtaatgatctgagaaacagcatcatttgtccatgtatcccgattaagcataagt |
3028982 |
T |
|
| Q |
510 |
gagttgaatt |
519 |
Q |
| |
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|||||||||| |
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|
| T |
3028983 |
gagttgaatt |
3028992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 439 - 503
Target Start/End: Original strand, 538081 - 538145
Alignment:
| Q |
439 |
agaatatgaagtttgtagtaatgatctgagaaacagcatcatttgtccatgtatcccgattaagc |
503 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
538081 |
agaatatgaagtttgtactaatgatctgagaaacagcatcatttgcccatgtatcccgattaagc |
538145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 439 - 503
Target Start/End: Complemental strand, 584521 - 584457
Alignment:
| Q |
439 |
agaatatgaagtttgtagtaatgatctgagaaacagcatcatttgtccatgtatcccgattaagc |
503 |
Q |
| |
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| T |
584521 |
agaatatgaagtttgtactaatgatctgagaaacagcatcgtttgcccatgtatcccgattaagc |
584457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 284 - 381
Target Start/End: Original strand, 536950 - 537047
Alignment:
| Q |
284 |
acatacttctaataaagtttgaggttgaactagtccttcccaagagtgcatgttttggccagtgatgggatgaataataagcacaacaggaattgaat |
381 |
Q |
| |
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|||||||||||||||| ||||||||| ||| | ||| ||||| ||| ||| |||| |||||||||||||| ||||| ||||||| |||||||||||| |
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| T |
536950 |
acatacttctaataaactttgaggttcaaccattccgtcccaggagcacatctttttgccagtgatgggatcaataacaagcacagcaggaattgaat |
537047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 135 - 199
Target Start/End: Original strand, 536754 - 536818
Alignment:
| Q |
135 |
cttgtgagacaaggtattgtggtgatccttaggggtagcatcaaggaatgtcagcagaccctaaa |
199 |
Q |
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|||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||| |
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| T |
536754 |
cttgtgagacaaggtattgtggtgatccgtaggaccagcatcaaggaatgttagcagaccctaaa |
536818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 284 - 433
Target Start/End: Complemental strand, 585826 - 585677
Alignment:
| Q |
284 |
acatacttctaataaagtttgaggttgaactagtccttcccaagagtgcatgttttggccagtgatgggatgaataataagcacaacaggaattgaattg |
383 |
Q |
| |
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||||||||| | |||| ||| |||||||| | |||| |||| ||| | || ||||| ||||||||||||| |||||||||||| |||||||| ||| |
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| T |
585826 |
acatacttcaattaaactttcaggttgaatcattcctccccaggagcgtatcttttgaccagtgatgggatcaataataagcacgacaggaatcaaatcc |
585727 |
T |
|
| Q |
384 |
agtttgtaataagtgcatagttttttgcctttagttgtatcatcatatac |
433 |
Q |
| |
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||| |||||| |||||| | || | ||||| |||||||||||||||||| |
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| T |
585726 |
agtctgtaatcagtgcagaccttgtggccttcagttgtatcatcatatac |
585677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 4e-30; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 282 - 433
Target Start/End: Original strand, 29813811 - 29813962
Alignment:
| Q |
282 |
atacatacttctaataaagtttgaggttgaactagtccttcccaagagtgcatgttttggccagtgatgggatgaataataagcacaacaggaattgaat |
381 |
Q |
| |
|
|||||||||||||||| | | ||||||||| | ||| |||| | | |||| ||||||||||||||||||| |||||||||||||||||||||||| | |
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|
| T |
29813811 |
atacatacttctaataggctgtcaggttgaaccattccaccccaggcgcgcatcttttggccagtgatgggatcaataataagcacaacaggaattgagt |
29813910 |
T |
|
| Q |
382 |
tgagtttgtaataagtgcatagttttttgcctttagttgtatcatcatatac |
433 |
Q |
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||| ||||||||||||| | ||||||||||| |||||||||||||||||| |
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| T |
29813911 |
caagtctgtaataagtgcagacttttttgccttcagttgtatcatcatatac |
29813962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 439 - 503
Target Start/End: Original strand, 29815213 - 29815277
Alignment:
| Q |
439 |
agaatatgaagtttgtagtaatgatctgagaaacagcatcatttgtccatgtatcccgattaagc |
503 |
Q |
| |
|
|||||||||||||||| | ||| ||||||||||||| ||||||| ||||||||||||||||||| |
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|
| T |
29815213 |
agaatatgaagtttgttttgatggtctgagaaacagcctcatttgcccatgtatcccgattaagc |
29815277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 199
Target Start/End: Original strand, 29813618 - 29813682
Alignment:
| Q |
135 |
cttgtgagacaaggtattgtggtgatccttaggggtagcatcaaggaatgtcagcagaccctaaa |
199 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||| |||||||| ||||| ||||||||||||| |
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|
| T |
29813618 |
cttgtgagacagggtattgtgatgatccttaggaccagcatcaaagaatggtagcagaccctaaa |
29813682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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