View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9367-LTR4-TNT-insertion-3 (Length: 325)
Name: F9367-LTR4-TNT-insertion-3
Description: F9367-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9367-LTR4-TNT-insertion-3 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 9 - 315
Target Start/End: Complemental strand, 870355 - 870047
Alignment:
| Q |
9 |
ctaattatttttattgcttnnnnnnnnctcaccttttccaatctaggttttattctttgctatgtttaattaaactctaaatgcaaatttaacattttta |
108 |
Q |
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| T |
870355 |
ctaattatttttattgcttaaaaaaaactcaccttttccaatctaggttttattctttgctatgtttaattaaactctaaatgcaaatttaacattttta |
870256 |
T |
|
| Q |
109 |
agagtgattgttttgattttgttctatagagatttgacgataatttttatgtttaatcactatcttattttgtgatttaaagtatgttttttgaatt--g |
206 |
Q |
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| T |
870255 |
agagtgattgttttgattttgttctatagagatttgacgataatttttatgtttaatcactatcttattttgtgatttaaagtatgttttttgaattcag |
870156 |
T |
|
| Q |
207 |
gtacgcagtttgggggtgttaattttgagggtaatttgaagtaaatgggagctaaactcaaagggattgtgataattaagatagttagaggaaaaagatt |
306 |
Q |
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| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
870155 |
atttggcgtttgggggtgttaattttgagggtaatttgaagtaaatgggagctaaactcaaagggattgtgataattaagatagttagaggaaaaagatt |
870056 |
T |
|
| Q |
307 |
attcaatta |
315 |
Q |
| |
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||||||||| |
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| T |
870055 |
attcaatta |
870047 |
T |
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