View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9367-LTR4-TNT-insertion-4 (Length: 238)
Name: F9367-LTR4-TNT-insertion-4
Description: F9367-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9367-LTR4-TNT-insertion-4 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 8 - 228
Target Start/End: Complemental strand, 19120071 - 19119851
Alignment:
| Q |
8 |
taaacagcatgaagattcttgttcggatgatgattttccacccattgccaggtgatggatgatcactgnnnnnnngttgttcttgtttcaattcttttaa |
107 |
Q |
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| T |
19120071 |
taaacagcatgaagattcttgttcggatgatgattttccacccattgccaggtgatggatgatcactgtttttttgttgttcttgtttcaattcttttaa |
19119972 |
T |
|
| Q |
108 |
tttgttcaactgctgctaccaatttggtataagattgaaagattatagtgttatgaatcttttatttaggatttaattctagttctagttatgccttaga |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19119971 |
tttgttcaactgctgctaccaatttggtataagattgaaagattatagtgttatgaatcttttatttaggatttaattctagttctagttatgccttaga |
19119872 |
T |
|
| Q |
208 |
gaggtatgtaactattgatta |
228 |
Q |
| |
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||||||||||||||||||||| |
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| T |
19119871 |
gaggtatgtaactattgatta |
19119851 |
T |
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