View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9367-LTR4-TNT-insertion-5 (Length: 688)

Name: F9367-LTR4-TNT-insertion-5
Description: F9367-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9367-LTR4-TNT-insertion-5
F9367-LTR4-TNT-insertion-5
[»] chr6 (2 HSPs)
chr6 (8-680)||(6769357-6770029)
chr6 (201-310)||(7437759-7437868)
[»] chr5 (4 HSPs)
chr5 (101-269)||(20723305-20723473)
chr5 (130-179)||(22698951-22699000)
chr5 (477-562)||(9611248-9611333)
chr5 (478-562)||(5580237-5580321)
[»] chr2 (2 HSPs)
chr2 (92-532)||(16136820-16137257)
chr2 (130-179)||(12995988-12996037)
[»] chr8 (1 HSPs)
chr8 (283-374)||(14763405-14763496)
[»] chr1 (2 HSPs)
chr1 (130-266)||(14126983-14127119)
chr1 (130-179)||(45275638-45275687)
[»] chr7 (1 HSPs)
chr7 (474-523)||(24269461-24269510)
[»] chr3 (2 HSPs)
chr3 (130-179)||(30470034-30470083)
chr3 (480-524)||(26392025-26392069)


Alignment Details
Target: chr6 (Bit Score: 648; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 648; E-Value: 0
Query Start/End: Original strand, 8 - 680
Target Start/End: Complemental strand, 6770029 - 6769357
Alignment:
Q  8 gatcccacactgagatactagttcctgttcctatgctccacttaaagccatttcggataacatctttgacgctccacatactcttccaaacataactcgg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6770029 gatcccacactgagatactagttcctgttcctatgctccacttaaagccatttcggataacatctttgacgctccacatactcttccaaacataactcgg 6769930  T
Q  108 attatgacctgctcttgcggtgaaataatcactatttgggaaatatttagctttgaataatttagtgatcaatgagtcaggttgtgtgagaatcttccaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6769929 attatgacctgctcttgcggtgaaataatcactatttgggaaatatttagctttgaataatttagtgatcaatgagtcaggttgtgtgagaatcttccaa 6769830  T
Q  208 gtctgcttccctaacattgccatgttaaaagctttgagtcctttaaatcccattcctccatatttcttaggaacggtaagtcgtttccaagatagccagt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6769829 gtctgcttccctaacattgccatgttaaaagctttgagtcctttaaatcccattcctccatatttcttaggaacggtaagtcgtttccaagatagccagt 6769730  T
Q  308 gcatacctcttctattaccatttccgtgaccccaccagaaggcgttgagcattttctctatctcctttattaaggtatttgggagtaagaacatatgctc 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6769729 gcatacctcttctattaccatttccgtgaccccaccagaaggcgttgagcattttctctatctcctttattaaggtatttgggagtaagaacatatgctc 6769630  T
Q  408 attaagtaagatggaatagaatgtagaacggacttgattaaaacttctctctctgcttgatagaggcacctactactccaagagttaattttgttccaaa 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6769629 attaagtaagatggaatagaatgtagaacggacttgattaaaacttctctttctgcttgatagaggcacctactactccaagagttaattttgttccaaa 6769530  T
Q  508 tgcgatcttttataaatttgaaagtagaattcttgcttctgccaatcattgaagggacccctagatactttcctgtgcctaagacttgtcgcactcccag 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6769529 tgcgatcttttataaatttgaaagtagaattcttgcttctgccaatcattgaagggacccctagatactttcctgtgcctaagacttgtcgcactcccag 6769430  T
Q  608 tatatttgatatattattttttgtttcctctggtgtattgcgactgnnnnnnntctcaggcttttggagatta 680  Q
    ||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||    
T  6769429 tatatttgatatattattttttgtttcctctggtgtattgcgactgaaaaaaatctcaggcttttggagatta 6769357  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 310
Target Start/End: Original strand, 7437759 - 7437868
Alignment:
Q  201 cttccaagtctgcttccctaacattgccatgttaaaagctttgagtcctttaaatcccattcctccatatttcttaggaacggtaagtcgtttccaagat 300  Q
    |||||||| |||||| || | ||| ||||| || ||||| || || |||||||| ||||| |||||| |   ||||||||| | ||| ||||||||||||    
T  7437759 cttccaagcctgctttccaaccatagccatattgaaagccttaaggcctttaaaacccatacctccaaacaccttaggaactgaaaggcgtttccaagat 7437858  T
Q  301 agccagtgca 310  Q
    ||||||||||    
T  7437859 agccagtgca 7437868  T

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Target: chr5 (Bit Score: 77; Significance: 2e-35; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 101 - 269
Target Start/End: Original strand, 20723305 - 20723473
Alignment:
Q  101 aactcggattatgacctgctcttgcggtgaaataatcactatttgggaaatatttagctttgaataatttagtgatcaatgagtcaggttgtgtgagaat 200  Q
    ||||||||||||| || |  ||||| | ||||||||||||||||||  ||||| |||||||||| | | ||||||| |  |||||||| || |||||||     
T  20723305 aactcggattatgtccaggacttgctgcgaaataatcactatttggataatatctagctttgaagagtctagtgattagagagtcagggtgagtgagaag 20723404  T
Q  201 cttccaagtctgcttccctaacattgccatgttaaaagctttgagtcctttaaatcccattcctccata 269  Q
     ||||| | ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  20723405 tttccacgcctgcttccctaacattgccatgttaaaagctttcagccctttaaatcccattcctccata 20723473  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 22698951 - 22699000
Alignment:
Q  130 aaataatcactatttgggaaatatttagctttgaataatttagtgatcaa 179  Q
    ||||||||||||| ||| |||||||||||||||| |||||||||||||||    
T  22698951 aaataatcactatgtggaaaatatttagctttgagtaatttagtgatcaa 22699000  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 477 - 562
Target Start/End: Original strand, 9611248 - 9611333
Alignment:
Q  477 ctactactccaagagttaattttgttccaaatgcgatcttttataaatttgaaagtagaattcttgcttctgccaatcattgaagg 562  Q
    ||||||||||| ||||| |||||  ||||||||||||| || |||||||| ||||| | ||  ||||| | ||||||||| |||||    
T  9611248 ctactactccaggagtttattttactccaaatgcgatccttaataaatttaaaagttgcatgtttgctgcggccaatcatagaagg 9611333  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 478 - 562
Target Start/End: Complemental strand, 5580321 - 5580237
Alignment:
Q  478 tactactccaagagttaattttgttccaaatgcgatcttttataaatttgaaagtagaattcttgcttctgccaatcattgaagg 562  Q
    |||| ||||| ||||||||||| ||||||||||||||||| || || ||||| || |  || || ||||| |||||||| |||||    
T  5580321 tactgctccatgagttaattttcttccaaatgcgatctttgatgaaattgaacgtcgcttttttacttcttccaatcatagaagg 5580237  T

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Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 92 - 532
Target Start/End: Original strand, 16136820 - 16137257
Alignment:
Q  92 tccaaacataactcggattatgacctgctcttgcggtgaaataatcactatttgggaaatatttagctttgaataatttagtgatcaatgagtcaggttg 191  Q
    |||| ||||| ||||||||||| || | |||||| |  || ||||||||| | ||||||||| ||||||||||||   |||||||||  || | ||| ||    
T  16136820 tccagacatagctcggattatgtcccgatcttgcagcaaagtaatcactagtagggaaatatctagctttgaatagcctagtgatcatggatttagggtg 16136919  T
Q  192 tgtgagaatcttccaagtctgcttccctaacattgccatgttaaaagctttgagtcctttaaatcccattcctccat-atttcttaggaacggtaagtcg 290  Q
     |||||||||||||| | ||||||||| ||||||||||| ||||| |||||||| | |||||| | ||||||||||| |  | ||||| || ||||| ||    
T  16136920 cgtgagaatcttccacgcctgcttccccaacattgccatattaaaggctttgagacttttaaaacacattcctccataaccttttagg-accgtaaggcg 16137018  T
Q  291 tttccaagatagccagtgcatacctcttctattaccatttccgtgaccccaccagaaggcgttgagcattttctctatctcctttattaaggtatttggg 390  Q
     ||||| || | ||| |||||||||||  || | ||||| || ||||||||||| || ||||| |||||||| || || || || ||||  | ||||||     
T  16137019 -ttccacgacaaccaatgcatacctctattacttccattgccatgaccccaccaaaatgcgttaagcattttttcaatttcattaattagagaatttggc 16137117  T
Q  391 agtaagaacatatgctcattaagtaagatggaatagaatgtagaacggacttgattaaaacttctctctctgcttgatagaggcacctactactccaaga 490  Q
    |  | |||  ||  ||||| |  ||||| |||||||| |||||||| || || || |  | ||||||| |||| ||  ||||||| | ||| ||||||||    
T  16137118 aacatgaaagta--ctcatcagataagacggaatagattgtagaaccgatttaatgaggatttctctccctgcctgtgagaggcaacgactgctccaaga 16137215  T
Q  491 gttaattttgttccaaatgcgatcttttataaatttgaaagt 532  Q
     ||||||||| |||| || |||||||||||||||||||||||    
T  16137216 attaattttgctccacattcgatcttttataaatttgaaagt 16137257  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 12996037 - 12995988
Alignment:
Q  130 aaataatcactatttgggaaatatttagctttgaataatttagtgatcaa 179  Q
    ||||| |||||||  || |||||||||||||||| |||||||||||||||    
T  12996037 aaatagtcactatgcggaaaatatttagctttgagtaatttagtgatcaa 12995988  T

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Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 283 - 374
Target Start/End: Original strand, 14763405 - 14763496
Alignment:
Q  283 gtaagtcgtttccaagatagccagtgcatacctcttctattaccatttccgtgaccccaccagaaggcgttgagcattttctctatctcctt 374  Q
    |||||||||| |||||||| ||  |||||||| |||||| |||||||||| |||| |||||| ||||| |||||||||||||||||||||||    
T  14763405 gtaagtcgttcccaagataacctatgcataccccttctactaccatttccatgacaccaccaaaaggcattgagcattttctctatctcctt 14763496  T

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Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 130 - 266
Target Start/End: Complemental strand, 14127119 - 14126983
Alignment:
Q  130 aaataatcactatttgggaaatatttagctttgaataatttagtgatcaatgagtcaggttgtgtgagaatcttccaagtctgcttccctaacattgcca 229  Q
    |||||||||||||| ||||| ||| ||||||||| || | ||||||| || ||  ||||||  ||||| |||||||| |||||||||| |||||||||||    
T  14127119 aaataatcactattggggaagtatctagctttgagtagtctagtgattaaagatccaggttacgtgagtatcttccacgtctgcttccttaacattgcca 14127020  T
Q  230 tgttaaaagctttgagtcctttaaatcccattcctcc 266  Q
    | ||||| |||||||| | ||| || ||||| |||||    
T  14127019 tattaaaggctttgagacttttgaaacccatgcctcc 14126983  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 45275638 - 45275687
Alignment:
Q  130 aaataatcactatttgggaaatatttagctttgaataatttagtgatcaa 179  Q
    ||||| |||||||  || |||||||||||||||| |||||||||||||||    
T  45275638 aaatagtcactatgcggaaaatatttagctttgagtaatttagtgatcaa 45275687  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 523
Target Start/End: Original strand, 24269461 - 24269510
Alignment:
Q  474 cacctactactccaagagttaattttgttccaaatgcgatcttttataaa 523  Q
    |||||||| ||||||||||| ||||| ||||||||| |||| ||||||||    
T  24269461 cacctactgctccaagagttgattttattccaaatgtgatcctttataaa 24269510  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 30470034 - 30470083
Alignment:
Q  130 aaataatcactatttgggaaatatttagctttgaataatttagtgatcaa 179  Q
    ||||| |||||||  || |||||||||||||||| |||||||||||||||    
T  30470034 aaatagtcactatgcggaaaatatttagctttgagtaatttagtgatcaa 30470083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 480 - 524
Target Start/End: Original strand, 26392025 - 26392069
Alignment:
Q  480 ctactccaagagttaattttgttccaaatgcgatcttttataaat 524  Q
    ||||||||||| |||||||||| |||||||||||| || ||||||    
T  26392025 ctactccaagaattaattttgtgccaaatgcgatccttgataaat 26392069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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