View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9367-LTR4-TNT-insertion-6 (Length: 380)
Name: F9367-LTR4-TNT-insertion-6
Description: F9367-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9367-LTR4-TNT-insertion-6 |
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Alignment Details
Target: chr8 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 9 - 372
Target Start/End: Complemental strand, 4918456 - 4918093
Alignment:
| Q |
9 |
gaactactctttttagcaaaagctggtaatatctctctattatacgcatcaaatctcttgtctataatgtccaaatacatcattaatcattgtttccatt |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4918456 |
gaactactctttttagcaaaagctggtaatatctctctattatacgcatcaaatctcttgtctataatgtccaaatacatcattaatcattgtttccatt |
4918357 |
T |
|
| Q |
109 |
ggatattcacaataacatatctcttgcacatgattttaatttctaaaagatgctgactagcttgtctctcaccattaagattctatccgacatagttttt |
208 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4918356 |
ggatattcacaataacatatctcttgcacatgattttaatttctaaaagatgctgactagcttgtctctcaccattaagattctatccgacatagttttt |
4918257 |
T |
|
| Q |
209 |
tgagaactgttgaaattttaagtgatccttgactattcctcgtgtatgatatttcgcatgtggacatggacattgtatcttcaataattccatcctcaaa |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4918256 |
tgagaactgttgaaattttaagtgatccttgactattcctcgtgtatgatatttcgcatgtggacatggacattgtatcttcaataattccatcctcaaa |
4918157 |
T |
|
| Q |
309 |
agcaaaatctaaaaatttacttaagtcagttaagtatttcgtattttgtcgtttcttactaatt |
372 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4918156 |
agcaaaatctaaaaatttacttaagtcagttaagtatttcgtattttgtcgtttcttactaatt |
4918093 |
T |
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