View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9370-LTR4-TNT-insertion-1 (Length: 133)
Name: F9370-LTR4-TNT-insertion-1
Description: F9370-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9370-LTR4-TNT-insertion-1 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 115; Significance: 8e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 8e-59
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 26921796 - 26921910
Alignment:
| Q |
9 |
cgaagagtaccaatatattacttctcattgtttaaatcatccttcgactggtacgatcaatcattcaaaaacacccttttcttttattctcactattgtt |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26921796 |
cgaagagtaccaatatattacttctcattgtttaaatcatccttcgactggtacgatcaatcattcaaaaacacccttttcttttattctcactattgtt |
26921895 |
T |
|
| Q |
109 |
attattctttgaatt |
123 |
Q |
| |
|
||||||||||||||| |
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|
| T |
26921896 |
attattctttgaatt |
26921910 |
T |
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