View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9370-LTR4-TNT-insertion-10 (Length: 580)

Name: F9370-LTR4-TNT-insertion-10
Description: F9370-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9370-LTR4-TNT-insertion-10
F9370-LTR4-TNT-insertion-10
[»] chr1 (2 HSPs)
chr1 (151-571)||(45782876-45783296)
chr1 (10-58)||(45783389-45783437)
[»] scaffold1343 (2 HSPs)
scaffold1343 (153-228)||(252-327)
scaffold1343 (506-563)||(633-690)
[»] chr5 (10 HSPs)
chr5 (413-467)||(37592218-37592272)
chr5 (413-467)||(37694577-37694631)
chr5 (413-467)||(37709506-37709560)
chr5 (487-530)||(37531176-37531219)
chr5 (487-530)||(37592383-37592426)
chr5 (487-530)||(37709671-37709714)
chr5 (487-530)||(37821784-37821827)
chr5 (413-467)||(37531011-37531065)
chr5 (488-530)||(37694743-37694785)
chr5 (413-467)||(37821619-37821673)


Alignment Details
Target: chr1 (Bit Score: 421; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 151 - 571
Target Start/End: Complemental strand, 45783296 - 45782876
Alignment:
Q  151 ggtgtccatttccataaatcaataaaatcagatgcctaaagaaaaattgataatgagctggttttctaattaacttcatatatctaatgagagatcatac 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45783296 ggtgtccatttccataaatcaataaaatcagatgcctaaagaaaaattgataatgagctggttttctaattaacttcatatatctaatgagagatcatac 45783197  T
Q  251 tatttatatcaaaagaaatccaatggtatgtgttctacttatcatttatttactacttagtatgatcctactaattgaccaaaaccaaatatgaaattac 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45783196 tatttatatcaaaagaaatccaatggtatgtgttctacttatcatttatttactacttagtatgatcctactaattgaccaaaaccaaatatgaaattac 45783097  T
Q  351 ctctgtgatctattaggataccaccacacaagaagcattgacagagggtactataattgaaccatcacagcttaaagcaacaatatgttttacccatatt 450  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45783096 ctctgtgatctattaggataccaccacacaagaagcattgacagagggtactataattgaaccatcacagcttaaagcaacaatatgttttacccatatt 45782997  T
Q  451 ttcaaatgaatgtgtatctatgagtgataactaatggaaataatatttggatgttgtgacaccattcaattccattttatcatttgattatatttgccat 550  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45782996 ttcaaatgaatgtgtatctatgagtgataactaatggaaataatatttggatgttgtgacaccattcaattccattttatcatttgattatatttgccat 45782897  T
Q  551 tagattgaatgtttacaattg 571  Q
    |||||||||||||||||||||    
T  45782896 tagattgaatgtttacaattg 45782876  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 45783437 - 45783389
Alignment:
Q  10 cagtgctatgaaataaagaaagttagaagtttccttgatatggatagta 58  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  45783437 cagtgctatgaaataaagaaagttagaagtttccttgatatggatagta 45783389  T

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Target: scaffold1343 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: scaffold1343
Description:

Target: scaffold1343; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 153 - 228
Target Start/End: Original strand, 252 - 327
Alignment:
Q  153 tgtccatttccataaatcaataaaatcagatgcctaaagaaaaattgataatgagctggttttctaattaacttca 228  Q
    ||||||| |||||||| ||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||    
T  252 tgtccatatccataaaccaataaaatcagatgcctaaagaaaaactgataatgaactagttttctaattaacttca 327  T

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Target: scaffold1343; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 506 - 563
Target Start/End: Original strand, 633 - 690
Alignment:
Q  506 gtgacaccattcaattccattttatcatttgattatatttgccattagattgaatgtt 563  Q
    ||||||||| ||||||  |||||||||| ||| |||||||||||||||||||||||||    
T  633 gtgacaccagtcaatttaattttatcatatgactatatttgccattagattgaatgtt 690  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 413 - 467
Target Start/End: Original strand, 37592218 - 37592272
Alignment:
Q  413 catcacagcttaaagcaacaatatgttttacccatattttcaaatgaatgtgtat 467  Q
    ||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||    
T  37592218 catcacagcttaaagcaacaatacgttttactcatattttcatatgaatgtgtat 37592272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 413 - 467
Target Start/End: Original strand, 37694577 - 37694631
Alignment:
Q  413 catcacagcttaaagcaacaatatgttttacccatattttcaaatgaatgtgtat 467  Q
    ||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||    
T  37694577 catcacagcttaaagcaacaatacgttttactcatattttcatatgaatgtgtat 37694631  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 413 - 467
Target Start/End: Original strand, 37709506 - 37709560
Alignment:
Q  413 catcacagcttaaagcaacaatatgttttacccatattttcaaatgaatgtgtat 467  Q
    ||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||    
T  37709506 catcacagcttaaagcaacaatacgttttactcatattttcatatgaatgtgtat 37709560  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 487 - 530
Target Start/End: Original strand, 37531176 - 37531219
Alignment:
Q  487 gaaataatatttggatgttgtgacaccattcaattccattttat 530  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  37531176 gaaataatatttggatgctgtgacaccattcaattccattttat 37531219  T

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Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 487 - 530
Target Start/End: Original strand, 37592383 - 37592426
Alignment:
Q  487 gaaataatatttggatgttgtgacaccattcaattccattttat 530  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  37592383 gaaataatatttggatgctgtgacaccattcaattccattttat 37592426  T

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Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 487 - 530
Target Start/End: Original strand, 37709671 - 37709714
Alignment:
Q  487 gaaataatatttggatgttgtgacaccattcaattccattttat 530  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  37709671 gaaataatatttggatgctgtgacaccattcaattccattttat 37709714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 487 - 530
Target Start/End: Original strand, 37821784 - 37821827
Alignment:
Q  487 gaaataatatttggatgttgtgacaccattcaattccattttat 530  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  37821784 gaaataatatttggatgctgtgacaccattcaattccattttat 37821827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 413 - 467
Target Start/End: Original strand, 37531011 - 37531065
Alignment:
Q  413 catcacagcttaaagcaacaatatgttttacccatattttcaaatgaatgtgtat 467  Q
    ||||||||||||||||||||||| ||||||| |||| ||||| ||||||||||||    
T  37531011 catcacagcttaaagcaacaatacgttttactcataatttcatatgaatgtgtat 37531065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 488 - 530
Target Start/End: Original strand, 37694743 - 37694785
Alignment:
Q  488 aaataatatttggatgttgtgacaccattcaattccattttat 530  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  37694743 aaataatatttggatgctgtgacaccattcaattccattttat 37694785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 413 - 467
Target Start/End: Original strand, 37821619 - 37821673
Alignment:
Q  413 catcacagcttaaagcaacaatatgttttacccatattttcaaatgaatgtgtat 467  Q
    |||||||||||||||||||||||  |||||| |||||||||| ||||||||||||    
T  37821619 catcacagcttaaagcaacaatacattttactcatattttcatatgaatgtgtat 37821673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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