View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9370-LTR4-TNT-insertion-2 (Length: 276)
Name: F9370-LTR4-TNT-insertion-2
Description: F9370-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9370-LTR4-TNT-insertion-2 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 7 - 266
Target Start/End: Original strand, 27099370 - 27099629
Alignment:
| Q |
7 |
ataatgaatgaatgagggaccatgatgagtgcatgcactcaaattttgacgcgtttacacagccaacacatctatgccgttgaatcaagattaaaccgtc |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27099370 |
ataatgaatgaatgagggaccatgatgagtgcatgcactcaaattttgacgcgtttacacagccaacacatctatgccgttgaatcaagattaaaccgtc |
27099469 |
T |
|
| Q |
107 |
taaacttttaatttggtattttctatttaaaaagaattaaaaatagcattgaaatttaaaccatttaatcttaatccaacgaccacgaatgtattgtcta |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27099470 |
taaacttttaatttggtattttctatttaaaaagaattaaaaatagcattgaaatttaaaccatttaatcttaatccaacgaccacgaatgtattgtcta |
27099569 |
T |
|
| Q |
207 |
catgaatgcttcaaaattttgacggaaggaaaataccattccttgaaggaggtcatatta |
266 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
27099570 |
catgaatgcttcaaaattttgatggaaggaaaataccattccttgaaggaggtcatatta |
27099629 |
T |
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