View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9370-LTR4-TNT-insertion-3 (Length: 805)
Name: F9370-LTR4-TNT-insertion-3
Description: F9370-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9370-LTR4-TNT-insertion-3 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] chr4 (6 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 795; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 795; E-Value: 0
Query Start/End: Original strand, 11 - 805
Target Start/End: Complemental strand, 8899531 - 8898737
Alignment:
| Q |
11 |
ggtaagatgcctgcattgcaatgccacagagcccttcagcagcttcaactcccctttgcatcataatgtaaccttcttcaccccaatcagttccccatga |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8899531 |
ggtaagatgcctgcattgcaatgccacagagcccttcagcagcttcaactcccctttgcatcataatgtaaccttcttcaccccaatcagttccccatga |
8899432 |
T |
|
| Q |
111 |
gttcttaaccaaccaatacttggttccatcattactgacaccataacctacggcagtgacaccgtgatccaactcagttccgcatgaaccggtaaataca |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8899431 |
gttcttaaccaaccaatacttggttccatcattactgacaccataacctacggcagtgacaccgtgatccaactcagttccgcatgaaccggtaaataca |
8899332 |
T |
|
| Q |
211 |
ccacttttgtaaaattgaaagtcagagccactagcatcaattgctacagaaattggttgatttgccactgctttttgcagtgcttgctcattgttggcag |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8899331 |
ccacttttgtaaaattgaaagtcagagccactagcatcaattgctacagaaattggttgatttgccactgctttttgcagtgcttgctcattgttggcag |
8899232 |
T |
|
| Q |
311 |
gaacatcttcatacccggtaatagtagttgcttgaatggatgctttatttgcattacatgttccatcaacaccctgataggggtattgagcttcagtgtt |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8899231 |
gaacatcttcatacccggtaatagtagttgcttgaatggatgctttatttgcattacatgttccatcaacaccctgataggggtattgagcttcagtgtt |
8899132 |
T |
|
| Q |
411 |
gagtccatgattttgaatgatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgt |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8899131 |
gagtccatgattttgaatgatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgt |
8899032 |
T |
|
| Q |
511 |
tctgataaagagaccaactttccagtactcaacttatgaattccttcggttgctgcaacagcagaaaacgcccaacaacatcctacaaaatgcaagttaa |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8899031 |
tctgataaagagaccaactttccagtactcaacttatgaattccttcggttgctgcaacagcagaaaacgcccaacaacatcctacaaaatgcaagttaa |
8898932 |
T |
|
| Q |
611 |
aatttacccgagttagatgaaaattcaatttttgatcacattgaattaaatgcattagtttttagatagaaacgtaccacattggccttggttcttcaca |
710 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8898931 |
aatttacccgagttagatgaaaattcaatttttgatcacattgaattaaatgcattagtttttagatagaaacgtaccacattggccttggttcttcaca |
8898832 |
T |
|
| Q |
711 |
ggtgtcactgctcctttcttcctccaatccactgtagatgggattgcacttacattttcatacttaaaagtagttgtccttatgattgatgagca |
805 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8898831 |
ggtgtcactgctcctttcttcctccaatccactgtagatgggattgcacttacattttcatacttaaaagtagttgtccttatgattgatgagca |
8898737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 479; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 11 - 805
Target Start/End: Original strand, 30719443 - 30720240
Alignment:
| Q |
11 |
ggtaagatgcctgcattgcaatgccacagagcccttcagcagcttcaactcccctttgcatcataatgtaaccttcttcaccccaatcagttccccatga |
110 |
Q |
| |
|
|||||||||| | ||||||||||||||| || ||||| || || || ||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
30719443 |
ggtaagatgcttccattgcaatgccacaaagtccttcggctgcatcgactcccctttgcatcttaatgtatccttcttcaccccaatcagttccccatga |
30719542 |
T |
|
| Q |
111 |
gttcttaaccaaccaatacttggttccatcattactgacaccataacctacggcagtgacaccgtgatccaactcagttccgcatgaaccggtaaataca |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| || |||||||||||||| |||||||| ||||| ||| |
|
|
| T |
30719543 |
attcttaaccaaccaatacttggttccatcattaccgacaccataacctacggctgtgacaccatggtccaactcagttccacatgaaccagtaaagaca |
30719642 |
T |
|
| Q |
211 |
ccacttttgtaaaattgaaagtcagagccactagcatcaattgctacagaaattggttgatttgccactgctttttgcagtgcttgctcattgttggcag |
310 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||||||||||| ||||| |||||||| |||||||||||||||| |
|
|
| T |
30719643 |
ccacttttgtaaaactgaaagtcagacccactagcatcaatagctacggaaattggttgatttgccacagctttctgcagtgcctgctcattgttggcag |
30719742 |
T |
|
| Q |
311 |
gaacatcttcatacccggtaatagtagttgcttgaatggatgctttatttgcattacatgttccatcaacaccctgataggggtattgagcttcagtgtt |
410 |
Q |
| |
|
| |||||||||||||||||||||||| ||| || ||||||||||| |||||| | || ||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
30719743 |
ggacatcttcatacccggtaatagtaactgcatggatggatgctttgtttgcactgcaagttccgtcaacaccttgataggggtattgagcttcagtgtt |
30719842 |
T |
|
| Q |
411 |
gagtccatgattttgaatgatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgt |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30719843 |
gagtccatgattttgaatgatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgt |
30719942 |
T |
|
| Q |
511 |
tctgataaagagaccaactttccagtactcaacttatgaattccttcggttgctgcaacagcagaaaacgcccaacaacatcctac-aaaatgcaagtta |
609 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||| |||| | || ||| |
|
|
| T |
30719943 |
tccgataaagagaccaacttcccagtactcaacttatggattccttcggttgccgcaacagcagaaaatgcccaacaacatcctacaaaaaggtaaatta |
30720042 |
T |
|
| Q |
610 |
aaatttacccgagttagatgaaaattcaatttttgatcacattg-----aattaaatgcattagtttttagatagaaacgtaccacattggccttggttc |
704 |
Q |
| |
|
||||| || ||||| |||| |||||||| ||||||||||| | |||| ||||||||| | |||||||| || |||||||||| ||||||||| |
|
|
| T |
30720043 |
aaattaactagagtttaatgacaattcaatatttgatcacatagtttgtaattgaatgcattacataatagatagacacttaccacattgaccttggttc |
30720142 |
T |
|
| Q |
705 |
ttcacaggtgtcactgctcctttcttcctccaatccactgtagatgggattgcacttacattttcatacttaaaagtagttgtccttatgattgatgagc |
804 |
Q |
| |
|
||||| ||||| |||||||||||||| |||||||||||||| ||||| | ||||| |||||||||||||||||||| ||||| || ||||||| |||| |
|
|
| T |
30720143 |
ttcactggtgttactgctcctttctttctccaatccactgttgatggaa---cacttgcattttcatacttaaaagtacttgtctttgtgattgaggagc |
30720239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 11 - 805
Target Start/End: Complemental strand, 30881916 - 30881119
Alignment:
| Q |
11 |
ggtaagatgcctgcattgcaatgccacagagcccttcagcagcttcaactcccctttgcatcataatgtaaccttcttcaccccaatcagttccccatga |
110 |
Q |
| |
|
|||||||||| | ||||||||||||||| || ||||| || || || ||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
30881916 |
ggtaagatgcttccattgcaatgccacaaagtccttcggctgcatcgactcccctttgcatcttaatgtatccttcttcaccccaatcagttccccatga |
30881817 |
T |
|
| Q |
111 |
gttcttaaccaaccaatacttggttccatcattactgacaccataacctacggcagtgacaccgtgatccaactcagttccgcatgaaccggtaaataca |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| || |||||||||||||| |||||||| ||||| ||| |
|
|
| T |
30881816 |
attcttaaccaaccaatacttggttccatcattaccgacaccataacctacggctgtgacaccatggtccaactcagttccacatgaaccagtaaagaca |
30881717 |
T |
|
| Q |
211 |
ccacttttgtaaaattgaaagtcagagccactagcatcaattgctacagaaattggttgatttgccactgctttttgcagtgcttgctcattgttggcag |
310 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||||||||||| ||||| |||||||| |||||||||||||||| |
|
|
| T |
30881716 |
ccacttttgtaaaactgaaagtcagacccactagcatcaatagctacggaaattggttgatttgccacagctttctgcagtgcctgctcattgttggcag |
30881617 |
T |
|
| Q |
311 |
gaacatcttcatacccggtaatagtagttgcttgaatggatgctttatttgcattacatgttccatcaacaccctgataggggtattgagcttcagtgtt |
410 |
Q |
| |
|
| |||||||||||||||||||||||| ||| || ||||||||||| |||||| | || ||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
30881616 |
ggacatcttcatacccggtaatagtaactgcatggatggatgctttgtttgcactgcaagttccgtcaacaccttgataggggtattgagcttcagtgtt |
30881517 |
T |
|
| Q |
411 |
gagtccatgattttgaatgatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgt |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30881516 |
gagtccatgattttgaatgatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgt |
30881417 |
T |
|
| Q |
511 |
tctgataaagagaccaactttccagtactcaacttatgaattccttcggttgctgcaacagcagaaaacgcccaacaacatcctac-aaaatgcaagtta |
609 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||| |||| | || ||| |
|
|
| T |
30881416 |
tccgataaagagaccaacttcccagtactcaacttatggattccttcggttgccgcaacagcagaaaatgcccaacaacatcctacaaaaaggtaaatta |
30881317 |
T |
|
| Q |
610 |
aaatttacccgagttagatgaaaattcaatttttgatcacattg-----aattaaatgcattagtttttagatagaaacgtaccacattggccttggttc |
704 |
Q |
| |
|
||||| || || || |||| |||||||| ||||||||||| | |||| ||||||||| | |||||||| || |||||||||| ||||||||| |
|
|
| T |
30881316 |
aaattaactagaatttaatgacaattcaatatttgatcacatagtttgtaattgaatgcattacataatagatagacacttaccacattgaccttggttc |
30881217 |
T |
|
| Q |
705 |
ttcacaggtgtcactgctcctttcttcctccaatccactgtagatgggattgcacttacattttcatacttaaaagtagttgtccttatgattgatgagc |
804 |
Q |
| |
|
||||| ||||| |||||||||||||| |||||||||||||| ||||| | ||||| |||||||||||||||||||| ||||| || ||||||| |||| |
|
|
| T |
30881216 |
ttcactggtgttactgctcctttctttctccaatccactgttgatggaa---cacttgcattttcatacttaaaagtacttgtctttgtgattgaggagc |
30881120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 11 - 787
Target Start/End: Original strand, 44730879 - 44731660
Alignment:
| Q |
11 |
ggtaagatgcctgcattgcaatgccacagagcccttcagcagcttcaactcccctttgcatcataatgtaaccttcttcaccccaatcagttccccatga |
110 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||| || || ||||||||||||||| ||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
44730879 |
ggtaagatgcttgcattgcaatgccacagagtccttcagcggcatccactcccctttgcatcctaatgtatccttcttcgccccaatcagttccccatga |
44730978 |
T |
|
| Q |
111 |
gttcttaaccaaccaatacttggttccatcattactgacaccataacctacggcagtgacaccgtgatccaactcagttccgcatgaaccggtaaataca |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||| || || |||||||| ||||||||||| ||||| |||||||| |||| ||| |
|
|
| T |
44730979 |
gttcttaaccaaccaatacttggttccatcattaccgacaccataacccacagcggtgacaccatgatccaactcggttccacatgaaccactaaagaca |
44731078 |
T |
|
| Q |
211 |
ccacttttgtaaaattgaaagtcagagccactagcatcaattgctacagaaattggttgatttgccactgctttttgcagtgcttgctcattgttggcag |
310 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||||||||||| || |||||||| ||||||||||| || |||||||||| ||| |||||||||||||||| |
|
|
| T |
44731079 |
ccgcttttgtaaaattgaaagtcagatccactagcatcaatggcaacagaaataggttgatttgcgacagctttttgcaatgcctgctcattgttggcag |
44731178 |
T |
|
| Q |
311 |
gaacatcttcatacccggtaatagtagttgcttgaatggatgctttatttgcattacatgttccatcaacaccctgataggggtattgagcttcagtgtt |
410 |
Q |
| |
|
| |||||||||||||||||||| |||| ||| |||||||| ||||| |||||||| |||||||| |||||||| ||||| |||||| |||||||| | |
|
|
| T |
44731179 |
ggacatcttcatacccggtaatggtagctgcatgaatggacgctttgtttgcattgcatgttccgtcaacaccttgataagggtatgcggcttcagtact |
44731278 |
T |
|
| Q |
411 |
gagtccatgattttgaatgatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgt |
510 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
44731279 |
aagtccgtgattttgaatgatgaatttgaaagcatcgtccataagaccaccctcacaaccttggtccacaccttttgtgtcacaatcaacaagttcttgt |
44731378 |
T |
|
| Q |
511 |
tctgataaagagaccaactttccagtactcaacttatgaattccttcggttgctgcaacagcagaaaacgcccaacaacatcctac--aaaatgcaagtt |
608 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||| |||| | || || |
|
|
| T |
44731379 |
tccgataaagagaccaactttccagtactcaacttagtaattccttcggttgctgcaacagctgaaaatgcccaacaacatcctacgaaaaacgtaaatt |
44731478 |
T |
|
| Q |
609 |
-aaaatttacccgagttagatgaaaattcaatttttgatcac--attgaattaaatgcattagtttttagatagaaacgtaccacattggccttggttct |
705 |
Q |
| |
|
|||||| | ||||| ||| |||| ||||||| ||||| || ||||| | | ||| | || |||||| || || |||||||||| |||||||||| |
|
|
| T |
44731479 |
aaaaattaattatagttaaatggcaattaaattttttatcacatatagaattgagtacatcacttattagattgatacttaccacattgaccttggttct |
44731578 |
T |
|
| Q |
706 |
tcacaggtgtcactgctcctttcttcctccaatccactgtagatgggattgcacttacattttcatacttaaaagtagttgt |
787 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44731579 |
tcacaggtgtcactgctcctttcttcctccaatccactgtggacgggattgcacttacattttcatacttaaaagtagttgt |
44731660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 11 - 805
Target Start/End: Original strand, 16867266 - 16868052
Alignment:
| Q |
11 |
ggtaagatgcctgcattgcaatgccacagagcccttcagcagcttcaactcccctttgcatcataatgtaaccttcttcaccccaatcagttccccatga |
110 |
Q |
| |
|
|||| ||||| ||||||||||||||||| || ||||||||||| ||||| || ||||||||||||||||| |||||||||||||| || |||||||| || |
|
|
| T |
16867266 |
ggtatgatgcttgcattgcaatgccacaaagtccttcagcagcatcaacacctctttgcatcataatgtatccttcttcaccccattcggttccccaaga |
16867365 |
T |
|
| Q |
111 |
gttcttaaccaaccaatacttggttccatcattactgacaccataacctacggcagtgacaccgtgatccaactcagttccgcatgaaccggtaaataca |
210 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||| ||||||||||| ||||| || ||||| |||||||||||||||||||||||||| ||||| || |
|
|
| T |
16867366 |
gtttttaaccaaccaatacttagttccatcattactaacaccataacccacggcggtaacaccatgatccaactcagttccgcatgaaccagtaaagacg |
16867465 |
T |
|
| Q |
211 |
ccacttttgtaaaattgaaagtcagagccactagcatcaattgctacagaaattggttgatttgccactgctttttgcagtgcttgctcattgttggcag |
310 |
Q |
| |
|
||||||||||| ||||||||||| || |||||||||||||| ||||| ||||| |||||||| |||||||||||||| ||||| ||||||||||||| | |
|
|
| T |
16867466 |
ccacttttgtagaattgaaagtcggaaccactagcatcaatggctacggaaatcggttgattagccactgctttttgtagtgcctgctcattgttggtcg |
16867565 |
T |
|
| Q |
311 |
gaacatcttcatacccggtaatagtagttgcttgaatggatgctttatttgcattacatgttccatcaacaccctgataggggtattgagcttcagtgtt |
410 |
Q |
| |
|
| |||||||||||||| ||||| ||| ||| | |||||| |||| ||||| || ||||| || |||||||| ||||| ||||| | ||||| || || |
|
|
| T |
16867566 |
ggacatcttcatacccagtaatggtaactgcattgatggatcctttgtttgcgttgcatgtcccgtcaacaccttgataagggtagttggcttcggtatt |
16867665 |
T |
|
| Q |
411 |
gagtccatgattttgaatgatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgt |
510 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||| ||||| ||||||||| |
|
|
| T |
16867666 |
tagtccatgattttgaatgatgaatttgaaagcatcgtccataagaccaccctcacaaccttggtccacacctttcgtgtcacagtcaacgagttcttgt |
16867765 |
T |
|
| Q |
511 |
tctgataaagagaccaactttccagtactcaacttatgaattccttcggttgctgcaacagcagaaaacgcccaacaacatcctacaaaatgcaagttaa |
610 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||| |
|
|
| T |
16867766 |
tctgataaagagatcaactttccagtactcaacttatgaattccttcggttgctgcaacagcagaaaacgcccaacaacatcctacaaaaggtaaattaa |
16867865 |
T |
|
| Q |
611 |
aatttacccgagttagatgaaaattcaatttttgatcacattgaattaaatgcattagtttttagatagaaacgtaccacattggccttggttcttcaca |
710 |
Q |
| |
|
|||| || |||||||| || || | ||||| || |||||||| ||| ||| || | |||| | ||||||||||||| ||||||||||||||| |
|
|
| T |
16867866 |
aattaactagagttagacgataaat-aatttcgaat--cattgaat---atg--ttacttatgagatgaacacgtaccacattgtccttggttcttcaca |
16867957 |
T |
|
| Q |
711 |
ggtgtcactgctcctttcttcctccaatccactgtagatgggattgcacttacattttcatacttaaaagtagttgtccttatgattgatgagca |
805 |
Q |
| |
|
||||| |||||||||||||||||||||||||| | ||||| ||||||||| |||||||||||||||||||| |||||||| ||||||| ||||| |
|
|
| T |
16867958 |
ggtgtaactgctcctttcttcctccaatccaccgaggatggaattgcacttgcattttcatacttaaaagtacttgtccttgtgattgaagagca |
16868052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 13 - 805
Target Start/End: Complemental strand, 30892997 - 30892202
Alignment:
| Q |
13 |
taagatgcctgcattgcaatgccacagagcccttcagcagcttcaactcccctttgcatcataatgtaaccttcttcaccccaatcagttccccatgagt |
112 |
Q |
| |
|
||||||||| ||||||||||||||| || |||| |||||| || || | |||||||||| ||||||| |||||||||||||||||| |||||||||| | |
|
|
| T |
30892997 |
taagatgccatcattgcaatgccacaaagtccttgagcagcatctacgctcctttgcatcctaatgtatccttcttcaccccaatcatttccccatgaat |
30892898 |
T |
|
| Q |
113 |
tcttaaccaaccaatacttggttccatcattactgacaccataacctacggcagtgacaccgtgatccaactcagttccgcatgaaccggtaaatacacc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | |||||||| || ||||| ||||| |||||||||| ||| || |||||||| || || ||||| |
|
|
| T |
30892897 |
tcttaaccaaccaatacttggttccatcattactaatgccataacccacagcagtaacaccatgatccaactgagtaccacatgaaccagtgaagacacc |
30892798 |
T |
|
| Q |
213 |
acttttgtaaaattgaaagtcagagccactagcatcaattgctacagaaattggttgatttgccactgctttttgcagtgcttgctcattgttggcagga |
312 |
Q |
| |
|
||||||||||||||| || || |||||||| |||||||| ||||| |||||||||||||| |||||||||||||||||||| | ||||||||| || || |
|
|
| T |
30892797 |
acttttgtaaaattggaaatcggagccactcgcatcaatggctacggaaattggttgattagccactgctttttgcagtgcattctcattgtttgccggg |
30892698 |
T |
|
| Q |
313 |
acatcttcatacccggtaatagtagttgcttgaatggatgctttatttgcattacatgttccatcaacaccctgataggggtattgagcttcagtgttga |
412 |
Q |
| |
|
||||||||||| || | |||||||| || | | || | || ||||||| | || ||||| |||||||| ||||||||||||||||||||||||| || |
|
|
| T |
30892697 |
acatcttcatatccagcaatagtagcagcaggggttgaagtttcatttgcactgcaagttccgtcaacaccttgataggggtattgagcttcagtgtgga |
30892598 |
T |
|
| Q |
413 |
gtccatgattttgaatgatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgttc |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30892597 |
gtccatgattttgaatgatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgttc |
30892498 |
T |
|
| Q |
513 |
tgataaagagaccaactttccagtactcaacttatgaattccttcggttgctgcaacagcagaaaacgcccaacaacatcctac-aaaatgcaagttaaa |
611 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||| |||| | || ||||| |
|
|
| T |
30892497 |
cgataaagagaccaacttcccagtactcaacttatggattccttcggttgccgcaacagcagaaaatgcccaacaacatcctacaaaaaggtaaattaaa |
30892398 |
T |
|
| Q |
612 |
atttacccgagttagatgaaaattcaatttttgatcacattg-----aattaaatgcattagtttttagatagaaacgtaccacattggccttggttctt |
706 |
Q |
| |
|
||| || ||||| |||| |||||||| ||||||||||| | |||| ||||||||| | |||||||| || |||||||||| ||||||||||| |
|
|
| T |
30892397 |
attaactagagtttaatgacaattcaatatttgatcacatagtttgtaattgaatgcattacataatagatagacacttaccacattgaccttggttctt |
30892298 |
T |
|
| Q |
707 |
cacaggtgtcactgctcctttcttcctccaatccactgtagatgggattgcacttacattttcatacttaaaagtagttgtccttatgattgatgagca |
805 |
Q |
| |
|
||| ||||| |||||||||||||| |||||||||||||| ||||| | ||||| |||||||||||||||||||| ||||| || ||||||| ||||| |
|
|
| T |
30892297 |
cactggtgttactgctcctttctttctccaatccactgttgatggaa---cacttgcattttcatacttaaaagtacttgtctttgtgattgaggagca |
30892202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 469 - 515
Target Start/End: Original strand, 31185667 - 31185713
Alignment:
| Q |
469 |
ccttggtctacaccttttgtgtcacaatcaacaagttcttgttctga |
515 |
Q |
| |
|
||||||||| ||||||||||||||||||| || || ||||||||||| |
|
|
| T |
31185667 |
ccttggtcttcaccttttgtgtcacaatctactagctcttgttctga |
31185713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 13 - 599
Target Start/End: Complemental strand, 31727687 - 31727101
Alignment:
| Q |
13 |
taagatgcctgcattgcaatgccacagagcccttcagcagcttcaactcccctttgcatcataatgtaaccttcttcaccccaatcagttccccatgagt |
112 |
Q |
| |
|
||||||| ||||||||||||||||| || ||||| | ||| || || |||||||||||| ||||||| |||||||||||||| | |||||||||||| | |
|
|
| T |
31727687 |
taagatggttgcattgcaatgccacatagtccttctgaagcatccacacccctttgcatcctaatgtacccttcttcaccccattgagttccccatgaat |
31727588 |
T |
|
| Q |
113 |
tcttaaccaaccaatacttggttccatcattactgacaccataacctacggcagtgacaccgtgatccaactcagttccgcatgaaccggtaaatacacc |
212 |
Q |
| |
|
|||| ||||||||||||| || |||| | || |||||||||||||| ||| ||||| ||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
31727587 |
tcttcaccaaccaatactcagtctcatcttcaccaacaccataacctacaacagctacaccatgatccaactcagttccacatgaaccagtaaatacacc |
31727488 |
T |
|
| Q |
213 |
acttttgtaaaattgaaagtcagagccactagcatcaattgctacagaaattggttgatttgccactgctttttgcagtgcttgctcattgttggcagga |
312 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| || || |||| |||||||| || || |||||||||| ||| ||||||| || | || |
|
|
| T |
31727487 |
acttttgtaaaattggaagtcagagccactagcatcaatggccaccgaaaccggttgattagctacggctttttgcaatgcctgctcatcatttacgggg |
31727388 |
T |
|
| Q |
313 |
acatcttcatacccggtaatagtagttgcttgaatggatgctttatttgcattacatgttccatcaacaccctgataggggtattgagcttcagtgttga |
412 |
Q |
| |
|
|||| || ||||||| ||| || | || || | ||| | || ||| ||||||||||||||||| ||||| ||||||| |||||||||| | | |
|
|
| T |
31727387 |
acattctcgtacccggaaatggttgcagcagagctgcctacttcagttttattgcatgttccatcaacaccttgataagggtattcagcttcagtgctaa |
31727288 |
T |
|
| Q |
413 |
gtccatgattttgaatgatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgttc |
512 |
Q |
| |
|
|||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
31727287 |
gtccattattttggatgatgaattcaaaagcatcatccataagaccaccctcacaaccttggtcttcaccatttgtgtcacaatcaacaagttcttgttc |
31727188 |
T |
|
| Q |
513 |
tgataaagagaccaactttccagtactcaacttatgaattccttcggttgctgcaacagcagaaaacgcccaacaacatcctacaaa |
599 |
Q |
| |
|
||||||||||||||| ||||| || |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
31727187 |
tgataaagagaccaaatttcctgtggtcaacttatgaattccttcggttgatgcaaccgcagaaaacgcccaacaacatcctacaaa |
31727101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 685 - 785
Target Start/End: Complemental strand, 31726774 - 31726674
Alignment:
| Q |
685 |
taccacattggccttggttcttcacaggtgtcactgctcctttcttcctccaatccactgtagatgggattgcacttacattttcatacttaaaagtagt |
784 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||| || |||||||||||||| |||||| | |||| ||||||| ||||| |||||||| |
|
|
| T |
31726774 |
taccacattggccttgatttttcacaggtgtcactgctccttcctgcctccaatccactgcagatggaacatcactcacatttttgtacttgaaagtagt |
31726675 |
T |
|
| Q |
785 |
t |
785 |
Q |
| |
|
| |
|
|
| T |
31726674 |
t |
31726674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 167
Target Start/End: Complemental strand, 4744959 - 4744868
Alignment:
| Q |
76 |
atgtaaccttcttcaccccaatcagttccccatgagttcttaaccaaccaatacttggttccatcattactgacaccataacctacggcagt |
167 |
Q |
| |
|
||||| ||||||||||||||| | | ||||| || ||||||| |||||||||||| |||||||| | ||| ||||| ||||| || ||||| |
|
|
| T |
4744959 |
atgtagccttcttcaccccaacctttaccccaagaattcttaatcaaccaatacttagttccatcttcacttacaccgtaaccaactgcagt |
4744868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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