View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9370-LTR4-TNT-insertion-4 (Length: 416)
Name: F9370-LTR4-TNT-insertion-4
Description: F9370-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9370-LTR4-TNT-insertion-4 |
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Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 9 - 406
Target Start/End: Complemental strand, 23230314 - 23229917
Alignment:
| Q |
9 |
agctattcgcaccaccttgatttgctgttaaaccatctcttctcccaagtagtacattccatgaaggaccccctgcctacaaagttatttttcaatctta |
108 |
Q |
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| T |
23230314 |
agctattcgcaccaccttgatttgctgttaaaccatctcttctcccaagtagtacattccatgaaggaccccctgcctacaaagttatttttcaatctta |
23230215 |
T |
|
| Q |
109 |
aataaatttcatctcattccaaataattaacaattagtaagcaactgaatttcaagnnnnnnnntaaaattatagttaccaaagacacagaagattcagc |
208 |
Q |
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| T |
23230214 |
aataaatttcatctcattccaaataattaacaattagtaagcaactgaatttcaagaaaaaaaataaaattatagttaccaaagacacagaagattcagc |
23230115 |
T |
|
| Q |
209 |
tgcaagggcaagaatatcagcgcaagatacaacgccagagcatgaactttcaagagagcttttgatggtatcaaccacaccgaatccacgaatggaattg |
308 |
Q |
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| T |
23230114 |
tgcaagggcaagaatatcagcgcaagatacaacgccagagcatgaactttcaagagagcttttgatggtatcaaccacaccgaatccacgaatggaattg |
23230015 |
T |
|
| Q |
309 |
aaatttggagctgcatttttctcactttgtgtaatgtttcctccttggtctaacaaaatcgacgcgtcacacccctaacgaacaaatacaatttatta |
406 |
Q |
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| T |
23230014 |
aaatttggagctgcatttttctcactttgtgtaatgtttcctccttggtctaacaaaatcgacgcgtcacacccctaacgaacaaatacaatttatta |
23229917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 40 - 83
Target Start/End: Complemental strand, 37111535 - 37111492
Alignment:
| Q |
40 |
accatctcttctcccaagtagtacattccatgaaggaccccctg |
83 |
Q |
| |
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|||||| ||||| |||||||||||||||||||||||||| |||| |
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| T |
37111535 |
accatcccttctgccaagtagtacattccatgaaggacctcctg |
37111492 |
T |
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