View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9370-LTR4-TNT-insertion-5 (Length: 771)

Name: F9370-LTR4-TNT-insertion-5
Description: F9370-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9370-LTR4-TNT-insertion-5
F9370-LTR4-TNT-insertion-5
[»] chr4 (1 HSPs)
chr4 (8-763)||(4082049-4082804)


Alignment Details
Target: chr4 (Bit Score: 722; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 722; E-Value: 0
Query Start/End: Original strand, 8 - 763
Target Start/End: Complemental strand, 4082804 - 4082049
Alignment:
Q  8 catccgaccaattatgctcggcggttgtccaagagacaaccgcctccatcacagccgtttggtcagtggttcgccgcttcgacaaaccacaagcctacaa 107  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4082804 catccgaccaattatgctcggcggtcgtccaagagacaaccgcctccatcacagccgtttggtcagtggttcgccgcttcgacaaaccacaagcctacaa 4082705  T
Q  108 aaatttcatcaagagttgtaacctcgttggtggcaacggtgatgtgggaacactcagggaggtcaaccttatatctggcctccctgctgcccgcagcacc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4082704 aaatttcatcaagagttgtaacctcgttggtggcaacggtgatgtgggaacactcagggaggtcaaccttatatctggcctccctgctgcccgcagcacc 4082605  T
Q  208 gaacgccttgagatcctcgatgaggagcgccatgtcatcagttttagtgttgttggtggtgatcacaagcttgctaactaccgttccgttactacactcc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4082604 gaacgccttgagatcctcgatgaggagcgccatgtcatcagttttagtgttgttggtggtgatcacaagcttgctaactaccgttccgttactacactcc 4082505  T
Q  308 atccctccgccgagggtgacggttccggcacggtgatagttgagtcatatgtggtggatattccgtcggaaaataccaaagaggatacacacgtgtttgt 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4082504 atccctccgccgagggtgacggttccggcacggtgatagttgagtcatatgtggtggatattccgtcggaaaataccaaagaggatacacacgtgtttgt 4082405  T
Q  408 tgatacaattgttcggtgtaaccttcagtcacttgcacaaaccgcagaaaacattaacaacaagtgttgttcctgannnnnnnnnngtttcacattgtat 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||    
T  4082404 tgatacaattgttcggtgtaaccttcagtcacttgcacaaaccgcagaaaacattaacaacaagtgttgttcctgattttttttttgtttcacattgtat 4082305  T
Q  508 aattttataatataattttcttggtaattttgttaattaagtattgtgtatattgtgattattattactagattgtgtaatgcatgagttggtaaattgc 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4082304 aattttataatataattttcttggtaattttgttaattaagtattgtgtatattgtgattattattactagattgtgtaatgcatgagttggtaaattgc 4082205  T
Q  608 atgatcaagttttcttacttattgatttattgttttaattgttttgagggatattgtttcttgatttaatttcacaagtgaaaaatacaacatggtataa 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4082204 atgatcaagttttcttacttattgatttattgttttaattgttttgagggatattgtttcttgatttaatttcacaagtgaaaaatacaacatggtataa 4082105  T
Q  708 ttaggtattattctgtatatatttatgttcaaaatcaatacttaacttgttagata 763  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4082104 ttaggtattattctgtatatatttatgttcaaaatcaatacttaacttgttagata 4082049  T

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