View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9370-LTR4-TNT-insertion-6 (Length: 196)
Name: F9370-LTR4-TNT-insertion-6
Description: F9370-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9370-LTR4-TNT-insertion-6 |
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Alignment Details
Target: chr6 (Bit Score: 180; Significance: 2e-97; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 9 - 188
Target Start/End: Original strand, 31201050 - 31201229
Alignment:
| Q |
9 |
gtaggtctatcacttggaaatgtttgaatgcaccataaacccacaattgtcattctccttgcaatcttgtcttcttctgtatccataactccatcaggtc |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31201050 |
gtaggtctatcacttggaaatgtttgaatgcaccataaacccacaattgtcattctccttgcaatcttgtcttcttctgtatccataactccatcaggtc |
31201149 |
T |
|
| Q |
109 |
tcaaattactaccaagctcaagcctattgtatacccagtgaggaaagtatatctcacttgtgagacttgcatcagcatta |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31201150 |
tcaaattactaccaagctcaagcctattgtatacccagtgaggaaagtatatctcacttgtgagacttgcatcagcatta |
31201229 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 137; E-Value: 9e-72
Query Start/End: Original strand, 9 - 185
Target Start/End: Original strand, 31189243 - 31189419
Alignment:
| Q |
9 |
gtaggtctatcacttggaaatgtttgaatgcaccataaacccacaattgtcattctccttgcaatcttgtcttcttctgtatccataactccatcaggtc |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
31189243 |
gtaggtctatcacttggaaatgtttgaatgcaccataaacccacaattgtcattctccttgcaatctcgtcttcttctgtatccataaccccatcaggtc |
31189342 |
T |
|
| Q |
109 |
tcaaattactaccaagctcaagcctattgtatacccagtgaggaaagtatatctcacttgtgagacttgcatcagca |
185 |
Q |
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||| |||| | |||||||| ||||||||||||||||| || ||||||||||||||||| ||| |||||||||||||| |
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| T |
31189343 |
tcagattagtgccaagctctagcctattgtatacccaatgtggaaagtatatctcactagtgtgacttgcatcagca |
31189419 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 129; E-Value: 5e-67
Query Start/End: Original strand, 9 - 185
Target Start/End: Original strand, 31145185 - 31145361
Alignment:
| Q |
9 |
gtaggtctatcacttggaaatgtttgaatgcaccataaacccacaattgtcattctccttgcaatcttgtcttcttctgtatccataactccatcaggtc |
108 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
31145185 |
gtaggtctatcacttggaaatgtttgaatgcaccataaacccacaatagtcattctccttgcaatctcatcttcttctgtatccataaccccatcaggtc |
31145284 |
T |
|
| Q |
109 |
tcaaattactaccaagctcaagcctattgtatacccagtgaggaaagtatatctcacttgtgagacttgcatcagca |
185 |
Q |
| |
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||| |||| | |||||||| ||||||||||||||||| || ||||||||||||||||| ||| |||||||||||||| |
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| T |
31145285 |
tcagattagtgccaagctctagcctattgtatacccaatgtggaaagtatatctcactagtgtgacttgcatcagca |
31145361 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 129; E-Value: 5e-67
Query Start/End: Original strand, 9 - 185
Target Start/End: Original strand, 31171498 - 31171674
Alignment:
| Q |
9 |
gtaggtctatcacttggaaatgtttgaatgcaccataaacccacaattgtcattctccttgcaatcttgtcttcttctgtatccataactccatcaggtc |
108 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
31171498 |
gtaggtctatcacttggaaatgtttgaatgcaccataaacccacaatagtcattctccttgcaatctcatcttcttctgtatccataaccccatcaggtc |
31171597 |
T |
|
| Q |
109 |
tcaaattactaccaagctcaagcctattgtatacccagtgaggaaagtatatctcacttgtgagacttgcatcagca |
185 |
Q |
| |
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||| |||| | |||||||| ||||||||||||||||| || ||||||||||||||||| ||| |||||||||||||| |
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| T |
31171598 |
tcagattagtgccaagctctagcctattgtatacccaatgtggaaagtatatctcactagtgtgacttgcatcagca |
31171674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 9 - 188
Target Start/End: Complemental strand, 31224906 - 31224727
Alignment:
| Q |
9 |
gtaggtctatcacttggaaatgtttgaatgcaccataaacccacaattgtcattctccttgcaatcttgtcttcttctgtatccataactccatcaggtc |
108 |
Q |
| |
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||||| |||||| | ||||| |||||||| ||||| ||||| ||||| |||||||||||||||||||| ||||||||||||||||| | ||||||||||| |
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| T |
31224906 |
gtaggcctatcattaggaaacgtttgaatacaccacaaacctacaatggtcattctccttgcaatcttatcttcttctgtatccattattccatcaggtc |
31224807 |
T |
|
| Q |
109 |
tcaaattactaccaagctcaagcctattgtatacccagtgaggaaagtatatctcacttgtgagacttgcatcagcatta |
188 |
Q |
| |
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| |||| |||| ||||||||||||| ||||||||||| |||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
31224806 |
taaaatcactagcaagctcaagccttttgtatacccaatgaggaaaatatatctcacttgtgcgacttgcatcagcatta |
31224727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 24 - 188
Target Start/End: Complemental strand, 30961386 - 30961222
Alignment:
| Q |
24 |
ggaaatgtttgaatgcaccataaacccacaattgtcattctccttgcaatcttgtcttcttctgtatccataactccatcaggtctcaaattactaccaa |
123 |
Q |
| |
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|||||||||||||| ||||| ||||||||||| ||||||||| ||||||||| | |||||||||||| | || |||||||||||||||| |||||||| |
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| T |
30961386 |
ggaaatgtttgaatacaccacaaacccacaatggtcattctctttgcaatctcattttcttctgtatcagttaccccatcaggtctcaaatcactaccaa |
30961287 |
T |
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| Q |
124 |
gctcaagcctattgtatacccagtgaggaaagtatatctcacttgtgagacttgcatcagcatta |
188 |
Q |
| |
|
| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||| |
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| T |
30961286 |
gttcaagcctattgtatacccaatgaggaaagtatatctcacttgtgtgacttgcatccgcatta |
30961222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 24 - 188
Target Start/End: Complemental strand, 30992868 - 30992704
Alignment:
| Q |
24 |
ggaaatgtttgaatgcaccataaacccacaattgtcattctccttgcaatcttgtcttcttctgtatccataactccatcaggtctcaaattactaccaa |
123 |
Q |
| |
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|||||||||||||| ||||| |||| |||||| ||||| ||| ||||||||| |||||||| |||||||| || |||||||||||||||| |||||||| |
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| T |
30992868 |
ggaaatgtttgaatacaccacaaactcacaatggtcatcctctttgcaatctcatcttcttccgtatccattaccccatcaggtctcaaataactaccaa |
30992769 |
T |
|
| Q |
124 |
gctcaagcctattgtatacccagtgaggaaagtatatctcacttgtgagacttgcatcagcatta |
188 |
Q |
| |
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| T |
30992768 |
gttcaagcctattgtatacccaatgaggaaagtatatctcacttgtgtgacttgcatccgcatta |
30992704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 12 - 181
Target Start/End: Complemental strand, 31230183 - 31230014
Alignment:
| Q |
12 |
ggtctatcacttggaaatgtttgaatgcaccataaacccacaattgtcattctccttgcaatcttgtcttcttctgtatccataactccatcaggtctca |
111 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| ||||| |||| |||||||||||| | |||||||| | | || ||| | || ||||||| |
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| T |
31230183 |
ggtctatcatttggaaatgtttgaatgcaccataaacctacaatggtcaatctccttgcaatttcatcttcttccgagacaatcacttcgtccggtctca |
31230084 |
T |
|
| Q |
112 |
aattactaccaagctcaagcctattgtatacccagtgaggaaagtatatctcacttgtgagacttgcatc |
181 |
Q |
| |
|
||| | | | || ||||| | ||||||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
31230083 |
aatcattgcgtagatcaagattcttgtatacccaatgaggaaagtatatctcacttgtttgacttgcatc |
31230014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 180
Target Start/End: Complemental strand, 31214632 - 31214466
Alignment:
| Q |
11 |
aggtctatcacttggaaatgtttgaatgcaccataaacccacaattgtcattctccttgcaatcttgtcttcttctgtatccataactccatcaggtctc |
110 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||| || || || ||||||||| |||| | |||| || ||||| | || ||| |||| ||||| |
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|
| T |
31214632 |
aggtctatcatttggaagtgtttgaatgcaccataatcctactatggtcattctctttgcga---tgtcatcatctgtggcaatcacttcatcgtgtctc |
31214536 |
T |
|
| Q |
111 |
aaattactaccaagctcaagcctattgtatacccagtgaggaaagtatatctcacttgtgagacttgcat |
180 |
Q |
| |
|
|||| | | | || |||| ||| ||||||||||| | |||||||||| |||||||||| ||||||||| |
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|
| T |
31214535 |
aaatcagtgtctagatcaaaccttttgtatacccaatcaggaaagtatttctcacttgtatgacttgcat |
31214466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 30945390 - 30945339
Alignment:
| Q |
12 |
ggtctatcacttggaaatgtttgaatgcaccataaacccacaattgtcattc |
63 |
Q |
| |
|
|||| |||| |||| ||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
30945390 |
ggtcgatcatttggcaatgtttgaatgcaccataaaccaacaatagtcattc |
30945339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 30955650 - 30955599
Alignment:
| Q |
12 |
ggtctatcacttggaaatgtttgaatgcaccataaacccacaattgtcattc |
63 |
Q |
| |
|
|||| |||| |||| ||||||||||||||||||||||| ||||| ||||||| |
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|
| T |
30955650 |
ggtcgatcatttggcaatgtttgaatgcaccataaaccaacaatggtcattc |
30955599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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