View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9370-LTR4-TNT-insertion-8 (Length: 416)
Name: F9370-LTR4-TNT-insertion-8
Description: F9370-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9370-LTR4-TNT-insertion-8 |
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Alignment Details
Target: chr1 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 10 - 408
Target Start/End: Complemental strand, 3919097 - 3918699
Alignment:
| Q |
10 |
catagatagcaccttcagatcaatataaaggaatcaaggtagtgtagtaaaagaggcaattgatacccccttctgaaatactgccagtattcagacaagt |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3919097 |
catagatagcaccttcagatcaatataaaggaatcaaggtagtgtagtaaaagaggcaattgatacccccttctgaaatactgccagtattcagacaagt |
3918998 |
T |
|
| Q |
110 |
actgattcaagccagctaaaaaattcagtgcattattgctgttcacacattatgcactaataccattaacacctatctaccccactctgctcaatggtcc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3918997 |
actgattcaagccagctaaaaaattcagtgcattattgctgttcacacattatgcactaataccattaacacctatctaccccactctgctcaatggtcc |
3918898 |
T |
|
| Q |
210 |
cattaccttaacttcattacatcaatcttgtgtgctaccaaacagaaaagtacaacaaatttggttacttgcacctttcatattgttgtaagttgttggt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3918897 |
cattaccttaacttcattacatcaatcttgtgtgctaccaaacagaaaagtacaacaaatttggttacttgcacctttcatattgttgtaagttgttggt |
3918798 |
T |
|
| Q |
310 |
catacataatatctttcttgtccataatgataacatcatcactaaaaaacttatactaaaatcatatcatactaaatttttatacacattttttaatta |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3918797 |
catacataatatctttcttgtccataatgataacatcatcactaaaaaacttatactaaaatcatatcatactaaatttttatacacattttttaatta |
3918699 |
T |
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