View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9370-LTR4-TNT-insertion-9 (Length: 308)
Name: F9370-LTR4-TNT-insertion-9
Description: F9370-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9370-LTR4-TNT-insertion-9 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 8 - 300
Target Start/End: Complemental strand, 11127438 - 11127146
Alignment:
| Q |
8 |
tcattttccttcaactttcaatagacacttttctaggcacccatgtgatacaacaaccaaaaaggtttcatgtgatcccttcaaaccctcactagtgcct |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11127438 |
tcattttccttcaactttcaatagacacttttctaggcacccatgtgatacaacaaccaaaaaggtttcatgtgatcccttcaaaccctcactagtgcct |
11127339 |
T |
|
| Q |
108 |
ctgtccgagatatatgcgagtgttggagaaacctttgaggtccctgagccacatccataaaattcttcatcggatttgagttccctaaaccgcatccata |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11127338 |
ctgtccgagatatatgcgagtgttggagaaacctttgaggtccctgagccacatccataaaattcttcatcggatttgagttccctaaaccgcatccata |
11127239 |
T |
|
| Q |
208 |
aattatggttcggttactggttaattttgcccacccctatccataatcatcaagtagtgaatccacccaatattagataggaaaacaatatta |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11127238 |
aattatggttcggttactggttaattttgcccacccctatccataatcatcaagtagtgaatccacccaatattagataggaaaacaatatta |
11127146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 246
Target Start/End: Original strand, 53329467 - 53329497
Alignment:
| Q |
216 |
ttcggttactggttaattttgcccaccccta |
246 |
Q |
| |
|
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| T |
53329467 |
ttcggttactggttaattttgcccaccccta |
53329497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 246
Target Start/End: Original strand, 53333145 - 53333175
Alignment:
| Q |
216 |
ttcggttactggttaattttgcccaccccta |
246 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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| T |
53333145 |
ttcggttactggttaattttgcccaccccta |
53333175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 246
Target Start/End: Original strand, 53336828 - 53336858
Alignment:
| Q |
216 |
ttcggttactggttaattttgcccaccccta |
246 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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|
| T |
53336828 |
ttcggttactggttaattttgcccaccccta |
53336858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 247
Target Start/End: Original strand, 35259168 - 35259201
Alignment:
| Q |
214 |
ggttcggttactggttaattttgcccacccctat |
247 |
Q |
| |
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|||||||||| ||||||||||||||||||||||| |
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|
| T |
35259168 |
ggttcggttattggttaattttgcccacccctat |
35259201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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