View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9422H-LTR4-TNT-insertion-12 (Length: 130)
Name: F9422H-LTR4-TNT-insertion-12
Description: F9422H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9422H-LTR4-TNT-insertion-12 |
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Alignment Details
Target: chr7 (Bit Score: 92; Significance: 4e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 4e-45
Query Start/End: Original strand, 8 - 120
Target Start/End: Original strand, 48101097 - 48101209
Alignment:
| Q |
8 |
cagaatcccgaatacaaatgccaattccagttcgggaatttgtcaatcccaaacacttnnnnnnncgtagagggtatttgtcaatttttcaacactactt |
107 |
Q |
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| T |
48101097 |
cagaatcccgaatacaaatgccaattccagttcgggaatttgtcaatcccaaacacttaaaaaaacgtagagggtatttgtcaatttttcaacactactt |
48101196 |
T |
|
| Q |
108 |
ccttttttgaatt |
120 |
Q |
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||||||||||||| |
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| T |
48101197 |
ccttttttgaatt |
48101209 |
T |
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