View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9422H-LTR4-TNT-insertion-14 (Length: 161)
Name: F9422H-LTR4-TNT-insertion-14
Description: F9422H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9422H-LTR4-TNT-insertion-14 |
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Alignment Details
Target: chr6 (Bit Score: 145; Significance: 1e-76; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 1e-76
Query Start/End: Original strand, 7 - 151
Target Start/End: Original strand, 32958299 - 32958443
Alignment:
| Q |
7 |
accaaatttgtcaatggggcttagattatcttcgtcgtaagaagaacatcatcaacggtaagaattgacaagagattgttgcagaacatgttaatgaagt |
106 |
Q |
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| T |
32958299 |
accaaatttgtcaatggggcttagattatcttcgtcgtaagaagaacatcatcaacggtaagaattgacaagagattgttgcagaacatgttaatgaagt |
32958398 |
T |
|
| Q |
107 |
atatgttttcgaataaaattaagaaccatgatttgcaaacgaatt |
151 |
Q |
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| T |
32958399 |
atatgttttcgaataaaattaagaaccatgatttgcaaacgaatt |
32958443 |
T |
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