View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9422H-LTR4-TNT-insertion-15 (Length: 714)
Name: F9422H-LTR4-TNT-insertion-15
Description: F9422H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9422H-LTR4-TNT-insertion-15 |
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Alignment Details
Target: chr7 (Bit Score: 696; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 696; E-Value: 0
Query Start/End: Original strand, 9 - 704
Target Start/End: Original strand, 29482171 - 29482866
Alignment:
| Q |
9 |
caagcacccttttcagtctttaacatatcctgcactatttggtaatctttaatgtgccttgtgtttgctatgaccaatgcagttgaactaaaagctcttg |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29482171 |
caagcacccttttcagtctttaacatatcctgcactatttggtaatctttaatgtgccttgtgtttgctatgaccaatgcagttgaactaaaagctcttg |
29482270 |
T |
|
| Q |
109 |
atctatagtcaatattttgcatgtaaagccgaatcccgtagaagattattccagtaatcacatcatttatagtctgcagttatgtaatacaaaatgagaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29482271 |
atctatagtcaatattttgcatgtaaagccgaatcccgtagaagattattccagtaatcacatcatttatagtctgcagttatgtaatacaaaatgagaa |
29482370 |
T |
|
| Q |
209 |
gataaaaagttttagtttctggtacaaatattcaaaaacagaaaacaatgtaaacaaagacacagttatgtaatacaaaatgagaacataaaaagttttc |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29482371 |
gataaaaagttttagtttctggtacaaatattcaaaaacagaaaacaatgtaaacaaagacacagttatgtaatacaaaatgagaacataaaaagttttc |
29482470 |
T |
|
| Q |
309 |
tcaaaccaaacagacatgttgagaatgactcatatttagacacagaagagtggcaagggggtggggagctgagttggcgaagctcccatatcgctgaaac |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29482471 |
tcaaaccaaacagacatgttgagaatgactcatatttagacacagaagagtggcaagggggtggggagctgagttggcgaagctcccatatcgctgaaac |
29482570 |
T |
|
| Q |
409 |
tctaattcatcacaaaataaaatggaaataaaaatgctctatagcaaaactatatatattgagtcagctcaggtatatccattgtttgtaacactagttc |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29482571 |
tctaattcatcacaaaataaaatggaaataaaaatgctctatagcaaaactatatatattgagtcagctcaggtatatccattgtttgtaacactagttc |
29482670 |
T |
|
| Q |
509 |
gtcacagaaataaaaaggaactataaatgctctattgtcgcaaaggtaggcaccattggtcgaattgcagtaataaagatcgatcgagtttattgtcttt |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29482671 |
gtcacagaaataaaaaggaactataaatgctctattgtcgcaaaggtaggcaccattggtcgaattgcagtaataaagatcgatcgagtttattgtcttt |
29482770 |
T |
|
| Q |
609 |
tatttttgtttctctaatcttcggttactagttactgttctaacaagacacttttgaaaaataaaaacaaacaaacctccgaagtttagatgaatt |
704 |
Q |
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| T |
29482771 |
tatttttgtttctctaatcttcggttactagttactgttctaacaagacacttttgaaaaataaaaacaaacaaacctccgaagtttagatgaatt |
29482866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 188
Target Start/End: Original strand, 30302864 - 30302936
Alignment:
| Q |
116 |
gtcaatattttgcatgtaaagccgaatcccgtagaagattattccagtaatcacatcatttatagtctgcagt |
188 |
Q |
| |
|
|||||| | ||||||||| |||| |||||| ||||| |||| |||||||||||||||||||| ||||||||| |
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| T |
30302864 |
gtcaatctcttgcatgtatagcctaatcccatagaaaattaccccagtaatcacatcatttattgtctgcagt |
30302936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 186
Target Start/End: Original strand, 30263619 - 30263689
Alignment:
| Q |
116 |
gtcaatattttgcatgtaaagccgaatcccgtagaagattattccagtaatcacatcatttatagtctgca |
186 |
Q |
| |
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|||||| | ||||||||| |||| |||||| ||||| |||| |||||||||||||||||||| ||||||| |
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| T |
30263619 |
gtcaatctcttgcatgtatagcctaatcccatagaaaattaccccagtaatcacatcatttattgtctgca |
30263689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 324 - 381
Target Start/End: Complemental strand, 42860223 - 42860166
Alignment:
| Q |
324 |
atgttgagaatgactcatatttagacacagaagagtggcaagggggtggggagctgag |
381 |
Q |
| |
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|||||||| |||| |||||| |||| ||||||||| ||||||||| ||||||||||| |
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| T |
42860223 |
atgttgagtatgattcatatatagatacagaagagaggcaaggggcaggggagctgag |
42860166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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