View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9422H-LTR4-TNT-insertion-2 (Length: 89)
Name: F9422H-LTR4-TNT-insertion-2
Description: F9422H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9422H-LTR4-TNT-insertion-2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 70; Significance: 4e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 4e-32
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 43463175 - 43463244
Alignment:
| Q |
10 |
agcaaccactatgaacagaatggttcacaattttgagattccaccaacaagttttagtgcatttggaatt |
79 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43463175 |
agcaaccactatgaacagaatggttcacaattttgagattccaccaacaagttttagtgcatttggaatt |
43463244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 42 times since January 2019
Visitors: 8141