View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9422H-LTR4-TNT-insertion-3 (Length: 374)

Name: F9422H-LTR4-TNT-insertion-3
Description: F9422H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9422H-LTR4-TNT-insertion-3
F9422H-LTR4-TNT-insertion-3
[»] chr8 (1 HSPs)
chr8 (8-366)||(43463173-43463531)


Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 8 - 366
Target Start/End: Original strand, 43463173 - 43463531
Alignment:
Q  8 caagcaaccactatgaacagaatggttcacaattttgagattccaccaacaagttttagtgcatttggaattctcaccttaaccatatgggtagctattt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43463173 caagcaaccactatgaacagaatggttcacaattttgagattccaccaacaagttttagtgcatttggaattctcaccttaaccatatgggtagctattt 43463272  T
Q  108 atgaccgcattatagtttctttgttatcaaagtacacnnnnnnnggaaaaggactcactttaaagcaaagaatgggaattggaataggaatatcatgttt 207  Q
    |||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43463273 atgaccgcattatagtttctttgttatcaaagtacacaaaaaaaggaaaaggactcactttaaagcaaagaatgggaattggaataggaatatcatgttt 43463372  T
Q  208 agccaccttagtagcagcattagtagagnnnnnnngaagaaatgaagcaattagagaaggatttataaatgatccaaaaggtgtagtgaacatgtctgca 307  Q
    ||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43463373 agccaccttagtagcagcattagtagagaaaaaaagaagaaatgaagcaattagagaaggatttataaatgatccaaaaggtgtagtgaacatgtctgca 43463472  T
Q  308 atgtggctagtacctcaacattgcttagttggtttagctgaggcattcagtgcaattgg 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43463473 atgtggctagtacctcaacattgcttagttggtttagctgaggcattcagtgcaattgg 43463531  T

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