View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9422H-LTR4-TNT-insertion-4 (Length: 420)

Name: F9422H-LTR4-TNT-insertion-4
Description: F9422H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9422H-LTR4-TNT-insertion-4
F9422H-LTR4-TNT-insertion-4
[»] chr1 (3 HSPs)
chr1 (8-407)||(13967658-13968057)
chr1 (364-406)||(1938275-1938317)
chr1 (168-208)||(2014141-2014181)
[»] chr3 (5 HSPs)
chr3 (8-407)||(4021243-4021643)
chr3 (143-222)||(29689319-29689398)
chr3 (26-63)||(4223402-4223439)
chr3 (151-208)||(4734910-4734967)
chr3 (24-104)||(4780140-4780219)
[»] chr7 (4 HSPs)
chr7 (90-407)||(17829248-17829565)
chr7 (13-109)||(17829137-17829233)
chr7 (26-105)||(6962433-6962512)
chr7 (160-206)||(6962331-6962377)
[»] chr6 (1 HSPs)
chr6 (148-206)||(18592943-18593001)
[»] chr5 (2 HSPs)
chr5 (35-99)||(24848495-24848559)
chr5 (34-88)||(26339974-26340028)


Alignment Details
Target: chr1 (Bit Score: 379; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 8 - 407
Target Start/End: Complemental strand, 13968057 - 13967658
Alignment:
Q  8 gtaagaaaccctccctaaaaaacagaataaaacaatgttactaaaataagataaaatattgtatactaactacaaactaaataaggatatttaaaaaagg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13968057 gtaagaaaccctccctaaaaaacagaataaaacaatgttactaaaataagataaaatattgtatactaactacaaactaaataaggatatttaaaaaagg 13967958  T
Q  108 atgaataaatatactaccatcaatgttttttgtagcaaggaaaagggatagaaataaaacaataacatatacaaacttgagagttttagccatatttttc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13967957 atgaataaatatactaccatcaatgttttttgtagcaaggaaaagggatagaaataaaacaataacatatacaaacttgagagttttagccatatttttc 13967858  T
Q  208 tctctatacatgtaaaaatttaaatatgatatgtccactttataatgtacaaagggaacaatgtgctaaacaaaatacctcttaaggagttgnnnnnnnc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |    
T  13967857 tctctatacatgtaaaaatttaaatatgatatgtccactttataatgtacaaagggaacaatgtgctaaacaaaatacctcttaaggagttgaaaaaaac 13967758  T
Q  308 ctaccttcattttgaaatcattattaagtgtattctaagtatatcgaagtgtttcctttgtccctttggcatacttattaaagaggtaacatagaaaaaa 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13967757 ctaccttcattttgaaatcattattaagtgtattctaagtatatcgaagtgtttcctttgtccctttggcatacttattaaagaggtaacatagaaaaaa 13967658  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 406
Target Start/End: Original strand, 1938275 - 1938317
Alignment:
Q  364 tttgtccctttggcatacttattaaagaggtaacatagaaaaa 406  Q
    ||||||||||| ||| ||||||||||||||||||||| |||||    
T  1938275 tttgtccctttagcacacttattaaagaggtaacataaaaaaa 1938317  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 208
Target Start/End: Original strand, 2014141 - 2014181
Alignment:
Q  168 aataacatatacaaacttgagagttttagccatatttttct 208  Q
    ||||| ||| |||||||| ||||||||||||||||||||||    
T  2014141 aataatatacacaaactttagagttttagccatatttttct 2014181  T

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Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 8 - 407
Target Start/End: Original strand, 4021243 - 4021643
Alignment:
Q  8 gtaagaaaccctccctaaaaaacagaataaaacaatgttactaaaataagataaaatattgtatactaactacaaactaaataaggatatttaaaaaagg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  4021243 gtaagaaaccctccctaaaaaacagaataaaacaatgttactaaaataagataaaatattgtatactaactacaaactaaataaggaaatttaaaaaagg 4021342  T
Q  108 atgaataaatatactaccatcaatgttttttgtagcaaggaaaagggatagaaataaaacaataacatatacaaacttgagagttttagccatatttttc 207  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  4021343 atgaataaatatactaccatcaatgttttttgcagcaaggaaaagggatagaaataaaacaataacatacacaaacttgagagttttagccatatttttc 4021442  T
Q  208 tctctatacatgt-aaaaatttaaatatgatatgtccactttataatgtacaaagggaacaatgtgctaaacaaaatacctcttaaggagttgnnnnnnn 306  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  4021443 tctctatacatgtaaaaaatttaaatatgatatgtccactttataatgtacaaagggaacaatgtgctaaacaaaatacctcttaaggagttgaaaaaaa 4021542  T
Q  307 cctaccttcattttgaaatcattattaagtgtattctaagtatatcgaagtgtttcctttgtccctttggcatacttattaaagaggtaacatagaaaaa 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4021543 cctaccttcattttgaaatcattattaagtgtattctaagtatatcgaagtgtttcctttgtccctttggcatacttattaaagaggtaacatagaaaaa 4021642  T
Q  407 a 407  Q
    |    
T  4021643 a 4021643  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 29689319 - 29689398
Alignment:
Q  143 caaggaaaagggatagaaataaaacaataacatatacaaacttgagagttttagccatatttttctctctatacatgtaa 222  Q
    ||||||| ||||| ||||||||||  |||| | ||| ||| ||||||||||||| |||||||||||| || |||||||||    
T  29689319 caaggaatagggaaagaaataaaatcataatacatataaatttgagagttttagtcatatttttctccctttacatgtaa 29689398  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 63
Target Start/End: Original strand, 4223402 - 4223439
Alignment:
Q  26 aaaacagaataaaacaatgttactaaaataagataaaa 63  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  4223402 aaaacaaaataaaaaaatgttactaaaataagataaaa 4223439  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 208
Target Start/End: Original strand, 4734910 - 4734967
Alignment:
Q  151 agggatagaaataaaacaataacatatacaaacttgagagttttagccatatttttct 208  Q
    ||||| ||||||||||  |||  ||| ||||||||||||||| |||||||||||||||    
T  4734910 agggaaagaaataaaatcatagaataaacaaacttgagagttctagccatatttttct 4734967  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 4780140 - 4780219
Alignment:
Q  24 aaaaaacagaataaaacaatgttactaaaataagataaaatattgtatactaactacaaactaaataaggatatttaaaaa 104  Q
    |||||| ||||||||| |||||||| ||||| | |||||  | | ||||| |||||||||||||| ||||| |||||||||    
T  4780140 aaaaaatagaataaaataatgttacaaaaatgatataaac-actatatacgaactacaaactaaagaaggaaatttaaaaa 4780219  T

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Target: chr7 (Bit Score: 158; Significance: 6e-84; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 90 - 407
Target Start/End: Original strand, 17829248 - 17829565
Alignment:
Q  90 aaggatatttaaaaaaggatgaataaatatactaccatcaatgttttttgtagcaaggaaaagggatagaaataaaacaataacatatacaaacttgaga 189  Q
    ||||| |||| ||||||||| ||||||||||| ||| |||||||| |||| | |||| ||||||||||||||||||||||||||||| |||||||| |||    
T  17829248 aaggaaatttgaaaaaggataaataaatataccaccgtcaatgttctttgcaacaagaaaaagggatagaaataaaacaataacatacacaaactttaga 17829347  T
Q  190 gttttagccatatttttctctctatacatgt-aaaaatttaaatatgatatgtccactttataatgtacaaagggaacaatgtgctaaacaaaatacctc 288  Q
    ||||||||||||||||||||||||| ||||| ||||| | |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  17829348 gttttagccatatttttctctctattcatgtaaaaaaataaaatatgatatgtccactttataatgtacaaagggaacgatgtgctaaa-aaaatacctc 17829446  T
Q  289 ttaaggagttgnnnnnnncctaccttcattttgaaatcattattaagtgtattctaagtatatcgaagtgtttcctttgtccctttggcatacttattaa 388  Q
    ||||| | |||       ||  || | | ||  ||||||||||||||||| |||||||||| |||| |||||||||||||||||||| | || |||||||    
T  17829447 ttaagaaattggaaaaaaccctccctaaattgaaaatcattattaagtgtcttctaagtatgtcgatgtgtttcctttgtccctttgacgtagttattaa 17829546  T
Q  389 agaggtaacatagaaaaaa 407  Q
    ||||| |||||||||||||    
T  17829547 agaggcaacatagaaaaaa 17829565  T

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Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 13 - 109
Target Start/End: Original strand, 17829137 - 17829233
Alignment:
Q  13 aaaccctccctaaaaaacagaataaaacaatgttactaaaataagataaaatattgtatactaactacaaactaaataaggatatttaaaaaaggat 109  Q
    |||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||| |||||||||| ||| ||||| |||| |||||||||    
T  17829137 aaaccctccctaaagaacagaataaaacaatgtcactaaaataaaataaaatattgtatacaaactacaaaccaaaaaaggaaatttgaaaaaggat 17829233  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 105
Target Start/End: Complemental strand, 6962512 - 6962433
Alignment:
Q  26 aaaacagaataaaacaatgttactaaaataagataaaatattgtatactaactacaaactaaataaggatatttaaaaaa 105  Q
    |||| ||||||||| ||||||| ||||| ||||||||||||||||||| ||| ||||| |||||||| | |||| |||||    
T  6962512 aaaagagaataaaataatgttaataaaacaagataaaatattgtatacaaacaacaaagtaaataagaaaatttgaaaaa 6962433  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 206
Target Start/End: Complemental strand, 6962377 - 6962331
Alignment:
Q  160 aataaaacaataacatatacaaacttgagagttttagccatattttt 206  Q
    |||||||  |||||||| ||||||||||||||||||||||| |||||    
T  6962377 aataaaatcataacataaacaaacttgagagttttagccattttttt 6962331  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 148 - 206
Target Start/End: Original strand, 18592943 - 18593001
Alignment:
Q  148 aaaagggatagaaataaaacaataacatatacaaacttgagagttttagccatattttt 206  Q
    |||||||||||||||||||  |||  ||| |||||||||||||||||| ||||||||||    
T  18592943 aaaagggatagaaataaaatcatataatacacaaacttgagagttttaaccatattttt 18593001  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 99
Target Start/End: Original strand, 24848495 - 24848559
Alignment:
Q  35 taaaacaatgttactaaaataagataaaatattgtatactaactacaaactaaataaggatattt 99  Q
    ||||| |||||||||||||| |||||||| ||||| ||| ||||| ||| |||| ||||||||||    
T  24848495 taaaaaaatgttactaaaatgagataaaagattgtgtacaaactaaaaagtaaagaaggatattt 24848559  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 26340028 - 26339974
Alignment:
Q  34 ataaaacaatgttactaaaataagataaaatattgtatactaactacaaactaaa 88  Q
    |||||| ||| |||||||||| ||||||||||||||||||  |||||||| ||||    
T  26340028 ataaaataatattactaaaatgagataaaatattgtatacgtactacaaagtaaa 26339974  T

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