View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9422H-LTR4-TNT-insertion-5 (Length: 548)
Name: F9422H-LTR4-TNT-insertion-5
Description: F9422H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9422H-LTR4-TNT-insertion-5 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 529; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 10 - 538
Target Start/End: Complemental strand, 36952655 - 36952127
Alignment:
| Q |
10 |
ataacaacactttgccaatgagttccccaaacaatcttcattttcgtaaagttcacaaacttcaaaaatattatccccactaatattattgctcttgtta |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36952655 |
ataacaacactttgccaatgagttccccaaacaatcttcattttcgtaaagttcacaaacttcaaaaatattatccccactaatattattgctcttgtta |
36952556 |
T |
|
| Q |
110 |
cataacattgcctcatgtaacatagtgttaccttgaacgttcttcatcttcacaaattctaacaagtcctccatatttgacttttcatcatactcttttg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36952555 |
cataacattgcctcatgtaacatagtgttaccttgaacgttcttcatcttcacaaattctaacaagtcctccatatttgacttttcatcatactcttttg |
36952456 |
T |
|
| Q |
210 |
ggtcatccaaattgttagtgtattctaaccatgccatttttatatcatgccgttcaatattagcataacttgctaatagctttttaacggtttggatgtg |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36952455 |
ggtcatccaaattgttagtgtattctaaccatgccatttttatatcatgccgttcaatattagcataacttgctaatagctttttaacggtttggatgtg |
36952356 |
T |
|
| Q |
310 |
tccacctcttgcagcaacatgtaaggcactatcattgtttttgttaaatgtgaacaaaagttttggagcatgttcaactacaagattcacaatggcatta |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36952355 |
tccacctcttgcagcaacatgtaaggcactatcattgtttttgttaaatgtgaacaaaagttttggagcatgttcaactacaagattcacaatggcatta |
36952256 |
T |
|
| Q |
410 |
ttaccattccaagctgcaatatgtagcacggtatttttcacaggtgtctcaattttatttaaattagtggaacccaacaaattcgttgaaaccccataaa |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36952255 |
ttaccattccaagctgcaatatgtagcacggtatttttcacaggtgtctcaattttatttaaattagtggaacccaacaaattcgttgaaaccccataaa |
36952156 |
T |
|
| Q |
510 |
ccaagttgtatgcttcactaatcaaatta |
538 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
36952155 |
ccaagttgtatgcttcactaatcaaatta |
36952127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 97 - 538
Target Start/End: Complemental strand, 36946666 - 36946222
Alignment:
| Q |
97 |
attgctcttgttacataacattgcctcatgtaacatagtgttaccttgaacgttcttcatcttcacaaattctaacaagtcctccatatttgacttttca |
196 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||||||| |||||| | |||| | | |||||||| ||| | ||||||||||||| || ||| |
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|
| T |
36946666 |
attgctcttgccacgtaacattgcctcatgtaacatagtgtttccttgagcattctccttgttcacaaaacataataggtcctccatatttaacacctca |
36946567 |
T |
|
| Q |
197 |
tcatactcttttgggtcatccaaattgttagt---gtattctaaccatgccatttttatatcatgccgttcaatattagcataacttgctaatagctttt |
293 |
Q |
| |
|
||||| |||| | |||| | | ||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||| |
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|
| T |
36946566 |
tcatagtcttctaaatcattcctactgttagtactgtattctaaccatgccatttttatatcacgccgttcaatattagtataacttgctaatagtgttt |
36946467 |
T |
|
| Q |
294 |
taacggtttggatgtgtccacctcttgcagcaacatgtaaggcactatcattgtttttgttaaatgtgaacaaaagttttggagcatgttcaactacaag |
393 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||| |||||| |
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|
| T |
36946466 |
taacggttgagatgtgtccacctcttgcagcaacatgtaaggggctatcattgtttttgttgaatgtgaacaaaagttttggagaatgttcaattacaag |
36946367 |
T |
|
| Q |
394 |
attcacaatggcattattaccattccaagctgcaatatgtagcacggtatttttcacaggtgtctcaattttatttaaattagtggaacccaacaaattc |
493 |
Q |
| |
|
|||||||||| |||||||||||| | ||||||||||||||| ||| ||||||||| ||| |||||||||| |||||||| |||||||||||||||| |
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|
| T |
36946366 |
attcacaatgtcattattaccatacgaagctgcaatatgtaacactgtatttttcgtaggggtctcaatttctaataaattagaggaacccaacaaattc |
36946267 |
T |
|
| Q |
494 |
gttgaaaccccataaaccaagttgtatgcttcactaatcaaatta |
538 |
Q |
| |
|
|||||| | ||||| ||||||| ||||||||||||| ||||||| |
|
|
| T |
36946266 |
gttgaacctccatacaccaagtgatatgcttcactaagcaaatta |
36946222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 113 - 538
Target Start/End: Complemental strand, 36963973 - 36963545
Alignment:
| Q |
113 |
aacattgcctcatgtaacatagtgttaccttgaacgttcttcatcttcacaaattctaacaagtcctccatatttgacttttcatcatactcttttgggt |
212 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| | |||| | | |||||||| ||| | ||||||||||||| || |||||||| |||| | | |
|
|
| T |
36963973 |
aacattgcctcatgtaacatagtgtttccttgagcattctccttgttcacaaaacataataggtcctccatatttaacacctcatcatagtcttctaaat |
36963874 |
T |
|
| Q |
213 |
catccaaattgttagt---gtattctaaccatgccatttttatatcatgccgttcaatattagcataacttgctaatagctttttaacggtttggatgtg |
309 |
Q |
| |
|
||| | | ||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||| |||||| |
|
|
| T |
36963873 |
cattcctactgttagtactgtattctaaccatgccatttttatatcacgccgttcaatattagtataacttgctaatagtgttttaacggttgagatgtg |
36963774 |
T |
|
| Q |
310 |
tccacctcttgcagcaacatgtaaggcactatcattgtttttgttaaatgtgaacaaaagttttggagcatgttcaactacaagattcacaatggcatta |
409 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||| |
|
|
| T |
36963773 |
tccacctcttgcagcaacatgtaaggggctatcattgtttttgttgaatgtgaacaaaagttttggagcatgttcaattacaagattcacaatgtcatct |
36963674 |
T |
|
| Q |
410 |
ttaccattccaagctgcaatatgtagcacggtatttttcacaggtgtctcaattttatttaaattagtggaacccaacaaattcgttgaaaccccataaa |
509 |
Q |
| |
|
||||||| | ||||||||||||||||||| ||||||| || ||| ||||||||||| ||||||||| | || ||||||||||||||||| | ||||| | |
|
|
| T |
36963673 |
ttaccatacgaagctgcaatatgtagcactgtattttgcataggggtctcaatttttgttaaattagagaaatccaacaaattcgttgaacctccataca |
36963574 |
T |
|
| Q |
510 |
ccaagttgtatgcttcactaatcaaatta |
538 |
Q |
| |
|
|||||| ||||||||||| | ||||||| |
|
|
| T |
36963573 |
ccaagtgatatgcttcactgagcaaatta |
36963545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 228 - 536
Target Start/End: Complemental strand, 36934971 - 36934663
Alignment:
| Q |
228 |
tgtattctaaccatgccatttttatatcatgccgttcaatattagcataacttgctaatagctttttaacggtttggatgtgtccacctcttgcagcaac |
327 |
Q |
| |
|
|||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||| |||||||| |
|
|
| T |
36934971 |
tgtactctaaccatgccatttttatctcactccgttcaatattagcataacttgctaatagcttttcaacggttgagatgtgtccatatctagcagcaac |
36934872 |
T |
|
| Q |
328 |
atgtaaggcactatcattgtttttgttaaatgtgaacaaaagttttggagcatgttcaactacaagattcacaatggcattattaccattccaagctgca |
427 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||| ||||| |
|
|
| T |
36934871 |
atgtaaggcactatcattgttttcgttaaacttgaacaaaagttttggagcatgttcaattacaagattcacaatgtcattattaccataccaaactgca |
36934772 |
T |
|
| Q |
428 |
atatgtagcacggtatttttcacaggtgtctcaattttatttaaattagtggaacccaacaaattcgttgaaaccccataaaccaagttgtatgcttcac |
527 |
Q |
| |
|
||||||||||| ||||||| || ||| ||||||||||| |||| |||| | || ||||||| ||||||||||| ||||| |||||| ||||||| || |
|
|
| T |
36934771 |
atatgtagcactgtattttccataggagtctcaatttttgttaatttagagaaatccaacaagttcgttgaaactccatataccaagagatatgctttac |
36934672 |
T |
|
| Q |
528 |
taatcaaat |
536 |
Q |
| |
|
||| ||||| |
|
|
| T |
36934671 |
taagcaaat |
36934663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 166 - 464
Target Start/End: Original strand, 37071726 - 37072024
Alignment:
| Q |
166 |
ttctaacaagtcctccatatttgacttttcatcatactcttttgggtcatccaaattgttagtgtattctaaccatgccatttttatatcatgccgttca |
265 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||| || |||||||| |||||||| |
|
|
| T |
37071726 |
ttctaacaagtcctccatatttgactcttcatcatagtcttttgggctatccaaattgttagtgtattctaaccatgctgttcttatatcacgccgttca |
37071825 |
T |
|
| Q |
266 |
atattagcata-acttgctaatagctttttaacggtttggatgtgtccacctcttgcagcaacatgtaaggcactatcattgtttttgttaaatgtgaac |
364 |
Q |
| |
|
||||||||||| ||| | |||||||||| |||| || ||||||||||| ||||||||||| |||||| ||||| |||||||||| ||||| |||| |
|
|
| T |
37071826 |
atattagcatatgctttc-aatagcttttcaacgattgagatgtgtccacatcttgcagcaatatgtaacgcactctcattgttttcattaaactcgaac |
37071924 |
T |
|
| Q |
365 |
aaaagttttggagcatgttcaactacaagattcacaatggcattattaccattccaagctgcaatatgtagcacggtatttttcacaggtgtctcaattt |
464 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||| || ||| |||||| |||||| ||||||||||| || ||||| |||||||| ||||| |
|
|
| T |
37071925 |
aaaagtgttggagcatgttcaactacaagactcacaatcttatcattgccattctgagctgctatatgtagcacagtgtttttggtaggtgtcttaattt |
37072024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 224 - 435
Target Start/End: Original strand, 37081535 - 37081746
Alignment:
| Q |
224 |
ttagtgtattctaaccatgccatttttatatcatgccgttcaatattagcataacttgctaatagctttttaacggtttggatgtgtccacctcttgcag |
323 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||||||| |||||||||| ||| |||||||||| |||| || |||||||||||||||||||| |
|
|
| T |
37081535 |
ttagtgtactctaaccatgccgtttttatatcatgccgttcaaaattagcataagctgccaatagcttttcaacgattgagatgtgtccacctcttgcag |
37081634 |
T |
|
| Q |
324 |
caacatgtaaggcactatcattgtttttgttaaatgtgaacaaaagttttggagcatgttcaactacaagattcacaatggcattattaccattccaagc |
423 |
Q |
| |
|
||| |||||| ||||| || ||||||| |||| |||||||||||||||||||||||||| ||||||| ||||||| || ||| |||| |||||| |
|
|
| T |
37081635 |
caatatgtaacgcactctcgttgttttcattaacctcgaacaaaagttttggagcatgttcaattacaagactcacaatcttatcattgccataccaagc |
37081734 |
T |
|
| Q |
424 |
tgcaatatgtag |
435 |
Q |
| |
|
|| |||||||| |
|
|
| T |
37081735 |
tgatatatgtag |
37081746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 109 - 206
Target Start/End: Original strand, 37071588 - 37071685
Alignment:
| Q |
109 |
acataacattgcctcatgtaacatagtgttaccttgaacgttcttcatcttcacaaattctaacaagtcctccatatttgacttttcatcatactctt |
206 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||| ||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
37071588 |
acataacattgcctcatgaaacatagtgtttccttcaacattctctatcttcacaaattttaacaagtcctccatatttgacttttcatcataatctt |
37071685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 96 - 464
Target Start/End: Original strand, 12495463 - 12495834
Alignment:
| Q |
96 |
tattgctcttgttacataacattgcctcatgtaacatagtgttaccttgaacgttcttcatcttcacaaattctaacaagtcctccatatttgacttttc |
195 |
Q |
| |
|
||||||| |||| || ||||||||||||||||||||||||||| ||| |||| |||||| ||| ||||| | ||||||||||||||||||||||||||| |
|
|
| T |
12495463 |
tattgcttttgtcacttaacattgcctcatgtaacatagtgttgcctcgaacattcttctcctttacaaaatttaacaagtcctccatatttgacttttc |
12495562 |
T |
|
| Q |
196 |
atcatactcttttgggtcatccaaa---ttgttagtgtattctaaccatgccatttttatatcatgccgttcaatattagcataacttgctaatagcttt |
292 |
Q |
| |
|
|||||| |||| | |||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||| |
|
|
| T |
12495563 |
atcatagtcttcttggtcatccttattttttttagtgtattctaaccatgccatttttatatcatgccgttcaatattcacataatttgctagtagcttt |
12495662 |
T |
|
| Q |
293 |
ttaacggtttggatgtgtccacctcttgcagcaacatgtaaggcactatcattgtttttgttaaatgtgaacaaaagttttggagcatgttcaactacaa |
392 |
Q |
| |
|
| ||||||| ||||||||||| ||||||||||||| || |||||||||||||||||||||||| | ||||||||||||||| || |||||| ||||| |
|
|
| T |
12495663 |
tcaacggttgaaatgtgtccaccatttgcagcaacatgaaatgcactatcattgtttttgttaaatttaaacaaaagttttggaacacgttcaattacaa |
12495762 |
T |
|
| Q |
393 |
gattcacaatggcattattaccattccaagctgcaatatgtagcacggtatttttcacaggtgtctcaattt |
464 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||||||||| ||||||| || ||| |||||||||| |
|
|
| T |
12495763 |
gattcacaatttcattattaccataccaagctgcaatatgtagcactgtattttccataggagtctcaattt |
12495834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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