View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9422H-LTR4-TNT-insertion-9 (Length: 179)
Name: F9422H-LTR4-TNT-insertion-9
Description: F9422H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9422H-LTR4-TNT-insertion-9 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 8 - 169
Target Start/End: Original strand, 45317142 - 45317303
Alignment:
| Q |
8 |
gattttgccaaatacctcagaaacagctgttgctcgtgggatgattgttattgctgaagatgataatctgagaaaatggtacatacggatacaattaaca |
107 |
Q |
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| T |
45317142 |
gattttgccaaatacctcagaaacagctgttgctcgtgggatgattgttattgctgaagatgataatctgagaaaatggtacatacggatacaattaaca |
45317241 |
T |
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| Q |
108 |
caaaatggacacttccttgaggtgtaatccaagcagtcacttcctaagttaaatatatatta |
169 |
Q |
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| T |
45317242 |
caaaatggacacttccttgaggtgtaatccaagcagtcacttcctaagttaaatatatatta |
45317303 |
T |
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