View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9458H-LTR4-TNT-insertion-1 (Length: 300)
Name: F9458H-LTR4-TNT-insertion-1
Description: F9458H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9458H-LTR4-TNT-insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 11 - 293
Target Start/End: Complemental strand, 20020642 - 20020360
Alignment:
| Q |
11 |
ggatgatgcatttcatggagactgaaagcaaagtggagcatgaagcatttttggtttattggttatcaaggtttgtatttccttcagattcttatgatac |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20020642 |
ggatgatgcatttcatggagactgaaagcaaagtggagcatgaagcatttttggtttattggttatcaaggtttgtatttccttcagattcttatgatac |
20020543 |
T |
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| Q |
111 |
catttccaaagctgtttttcctattgcaatacgtttagctcatggaaataagatagctctagcacctgctgttttagctagtatttatagagacttaact |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20020542 |
catttccaaagctgtttttcctattgcaatacgtttagctcatggaaataagatagctctagcacctgctgttttagctagtatttatagagacttaact |
20020443 |
T |
|
| Q |
211 |
ttgcttaagaacaccattaatgaaaatgccacaacaaccataaagagttttagagaaactatttgggcaccttttcaattggt |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20020442 |
ttgcttaagaacaccattaatgaaaatgccacaacaaccataaagagttttagagaaactatttgggcaccttttcaattggt |
20020360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 11 - 293
Target Start/End: Original strand, 19967639 - 19967921
Alignment:
| Q |
11 |
ggatgatgcatttcatggagactgaaagcaaagtggagcatgaagcatttttggtttattggttatcaaggtttgtatttccttcagattcttatgatac |
110 |
Q |
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|||||| |||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||| |
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| T |
19967639 |
ggatgaagcatttcatggagagtgaaagtaaagtggaacatgaagcatttttggtttattggttatcaaggtttgtttttcctgaagattctcatgatac |
19967738 |
T |
|
| Q |
111 |
catttccaaagctgtttttcctattgcaatacgtttagctcatggaaataagatagctctagcacctgctgttttagctagtatttatagagacttaact |
210 |
Q |
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||||| ||| ||||| | ||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| || ||||| |
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| T |
19967739 |
tatttcgaaaactgttatccctattgcaatacttttagctcatggaaatagaatagctcttgcacctgctgttttagctagtatttatagggatttaaca |
19967838 |
T |
|
| Q |
211 |
ttgcttaagaacaccattaatgaaaatgccacaacaaccataaagagttttagagaaactatttgggcaccttttcaattggt |
293 |
Q |
| |
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|||||||| | |||||| || ||||||||||||||||||| ||||||| ||||| |||| |||||||||||||||||||||| |
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| T |
19967839 |
ttgcttaatagcaccatcaagaaaaatgccacaacaaccattaagagttatagagcaactgtttgggcaccttttcaattggt |
19967921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 11 - 291
Target Start/End: Original strand, 19962946 - 19963226
Alignment:
| Q |
11 |
ggatgatgcatttcatggagactgaaagcaaagtggagcatgaagcatttttggtttattggttatcaaggtttgtatttccttcagattcttatgatac |
110 |
Q |
| |
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|||||| |||||||||||||| |||||| ||| ||||||||||||| |||||||||||||||||| ||||||||| |||||| ||||||| ||||||| |
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| T |
19962946 |
ggatgaagcatttcatggagaatgaaagtaaattggagcatgaagcttttttggtttattggttacaaaggtttgtttttcctgaagattctcatgatac |
19963045 |
T |
|
| Q |
111 |
catttccaaagctgtttttcctattgcaatacgtttagctcatggaaataagatagctctagcacctgctgttttagctagtatttatagagacttaact |
210 |
Q |
| |
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||||||| | ||||| | ||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||| |
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| T |
19963046 |
tatttccacaactgttatccctattgcaatacttttagctcatggaaatagaatagctcttgcacctgctgttttagctggtatttatagagacttaact |
19963145 |
T |
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| Q |
211 |
ttgcttaagaacaccattaatgaaaatgccacaacaaccataaagagttttagagaaactatttgggcaccttttcaattg |
291 |
Q |
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|||||||| | ||||||| | | | |||||||||| | | | ||| || ||||| ||||||||||||||||||||||||| |
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| T |
19963146 |
ttgcttaacagcaccattcagaagagtgccacaacacctacagagaattctagagtaactatttgggcaccttttcaattg |
19963226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 11 - 293
Target Start/End: Complemental strand, 20027454 - 20027172
Alignment:
| Q |
11 |
ggatgatgcatttcatggagactgaaagcaaagtggagcatgaagcatttttggtttattggttatcaaggtttgtatttccttcagattcttatgatac |
110 |
Q |
| |
|
|||||| |||||||||||||| |||||| ||| ||||||||||||| |||||||||||||||||| ||||||||| |||||| ||||||||||||||| |
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| T |
20027454 |
ggatgaagcatttcatggagagtgaaagtaaattggagcatgaagcttttttggtttattggttacaaaggtttgtttttcctgaagattcttatgatac |
20027355 |
T |
|
| Q |
111 |
catttccaaagctgtttttcctattgcaatacgtttagctcatggaaataagatagctctagcacctgctgttttagctagtatttatagagacttaact |
210 |
Q |
| |
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||||||| | ||||| | ||||||||||||| ||||||||||||||||| |||||||| | ||||||||||||||| |||||||||||||||||| | |
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| T |
20027354 |
tatttccacaactgttatccctattgcaatacttttagctcatggaaatagaatagctcttggacctgctgttttagccggtatttatagagacttaagt |
20027255 |
T |
|
| Q |
211 |
ttgcttaagaacaccattaatgaaaatgccacaacaaccataaagagttttagagaaactatttgggcaccttttcaattggt |
293 |
Q |
| |
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|||||||| | ||||||| | | | |||| ||||| ||| | ||| || |||| ||||| ||||||||||||||||||||| |
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| T |
20027254 |
ttgcttaatagcaccattcagaagagtgccgcaacacccagagagaattcgagagtaactacttgggcaccttttcaattggt |
20027172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 168 - 293
Target Start/End: Complemental strand, 19743850 - 19743725
Alignment:
| Q |
168 |
tctagcacctgctgttttagctagtatttatagagacttaactttgcttaagaacaccattaatgaaaatgccacaacaaccataaagagttttagagaa |
267 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19743850 |
tctagcacgtgctgttttagctagtatttatagagacttaaatttgcttaatagcaccattaatgaaaatgccacaacaaccataaagagttttagagaa |
19743751 |
T |
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| Q |
268 |
actatttgggcaccttttcaattggt |
293 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
19743750 |
cctatttgggcaccttttcaattggt |
19743725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 200 - 293
Target Start/End: Complemental strand, 14856425 - 14856332
Alignment:
| Q |
200 |
gagacttaactttgcttaagaacaccattaatgaaaatgccacaacaaccataaagagttttagagaaactatttgggcaccttttcaattggt |
293 |
Q |
| |
|
||||||||||||||||||| | | ||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
14856425 |
gagacttaactttgcttaatagcgccattaatggaaatgtcacaacaaccataaagagttttagagaaattatttgggcaccttttcaattggt |
14856332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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