View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9458H-LTR4-TNT-insertion-5 (Length: 106)
Name: F9458H-LTR4-TNT-insertion-5
Description: F9458H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9458H-LTR4-TNT-insertion-5 |
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Alignment Details
Target: chr1 (Bit Score: 89; Significance: 2e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 2e-43
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 33794856 - 33794944
Alignment:
| Q |
8 |
cttcttgcaatgtttggcttgcgaaacacaaacacagaagccagatcgtgaggaacttgaaagaacacttgagatggtggggctgaatt |
96 |
Q |
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| T |
33794856 |
cttcttgcaatgtttggcttgcgaaacacaaacacagaagccagatcgtgaggaacttgaaagaacacttgagatggtggggctgaatt |
33794944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 3e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 3e-36
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 16780639 - 16780551
Alignment:
| Q |
8 |
cttcttgcaatgtttggcttgcgaaacacaaacacagaagccagatcgtgaggaacttgaaagaacacttgagatggtggggctgaatt |
96 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
16780639 |
cttcttgcaatgtttggtttgcgaaacacaaacacagaagccagatcgtgaggaacttgaaagaacacttgagatggtagagctgaatt |
16780551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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