View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9458H-LTR4-TNT-insertion-6 (Length: 718)
Name: F9458H-LTR4-TNT-insertion-6
Description: F9458H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9458H-LTR4-TNT-insertion-6 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 702; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 702; E-Value: 0
Query Start/End: Original strand, 7 - 708
Target Start/End: Complemental strand, 33041683 - 33040982
Alignment:
| Q |
7 |
atgtgctacatatctattatacctcaacgacattgcaacaaattcacacaaagagctaactcatgcgtctttgttggcagcccgtggctataaagtttac |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33041683 |
atgtgctacatatctattatacctcaacgacattgcaacaaattcacacaaagagctaactcatgcgtctttgttggcagcccgtggctataaagtttac |
33041584 |
T |
|
| Q |
107 |
aaagtttatgaattgttctctagatcatttcacatattccatgaagacactttttccttccaatccttatcccaatttaactgcacctcgtgttcctttt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33041583 |
aaagtttatgaattgttctctagatcatttcacatattccatgaagacactttttccttccaatccttatcccaatttaactgcacctcgtgttcctttt |
33041484 |
T |
|
| Q |
207 |
ccgaatgttgttttgcctaattcaattccttatcatagttctagacctgctactgtcccaaacattgaacctgatcatgaaccccatgttattgatccta |
306 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33041483 |
ccgaatgttgttttgcctaattcaattccttatcatagttctagacctgctactgtcccaaacattgaacctgatcatgaaccccatgttattgatccta |
33041384 |
T |
|
| Q |
307 |
gtcctgatacaattgcaaaactatgtaggccatacattacacaattacaaactaaataacctgatctagactggccaagctcatcattgtcagtgtactt |
406 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33041383 |
gtcctgatacaattgcaaaactatgtaggccatacattacacaattacaaactaaataacctgatctagactggccaagctcatcattgtcagtgtactt |
33041284 |
T |
|
| Q |
407 |
ctaagtttttctgcttccaaacattgaaaactggcgcaattagacgtaaacaatgattgttgaatgaagacctgatttgaagaaatatgtatagatctac |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33041283 |
ctaagtttttctgcttccaaacattgaaaactggcgcaattagacgtaaacaatgattgttgaatgaagacctgatttgaagaaatatgtatagatctac |
33041184 |
T |
|
| Q |
507 |
ctcttggatatccaagtgaggggggatgtggtatgaaaactcaacaagtccttgtggtttaagtcaagcatcaaagcaatgatatcataagttttccatt |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33041183 |
ctcttggatatccaagtgaggggggatgtggtatgaaaactcaacaagtccttgtggtttaagtcaagcatcaaagcaatgatatcataagttttccatt |
33041084 |
T |
|
| Q |
607 |
attagaatacaacatggttgccatcaatcatcatttgatcactcttcgttcattgtaaagttcagatgatcaatagtgaaatgcatcttgcaatcacaat |
706 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
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| T |
33041083 |
attagaatacaacatggttgccatcaatcatcatttgatcactcttcgttcattgtaaagttcagatgatcaatagtgaaatgcatcttgcaatcacaat |
33040984 |
T |
|
| Q |
707 |
ta |
708 |
Q |
| |
|
|| |
|
|
| T |
33040983 |
ta |
33040982 |
T |
|
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