View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9468H-LTR4-TNT-insertion-1 (Length: 504)
Name: F9468H-LTR4-TNT-insertion-1
Description: F9468H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9468H-LTR4-TNT-insertion-1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 205 - 494
Target Start/End: Original strand, 42095007 - 42095296
Alignment:
| Q |
205 |
cttgtcaaagcatcaccttctcatcaaagcttcactctccatcatcatcttcaacatatgaactcaaacctagtcacactaactataagagaagttacag |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42095007 |
cttgtcaaagcatcaccttctcatcaaagcttcactctccatcatcatcttcaacatatgaactcaaacctagtcacactaactataagagaagttacag |
42095106 |
T |
|
| Q |
305 |
ttcctaaagaaacnnnnnnnntatgctgagtataaattgtgtgagaaggaaatagtaaaattgaaacaacattagtcgaacgtgagattatgagtgcccc |
404 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
42095107 |
ttcctaaagaaacaaaaaaaatatgctgagtataaattgtgtgagaaggaaatagtaaaattgaaacaacattagtcgaacttgagattatgagtgcccc |
42095206 |
T |
|
| Q |
405 |
ttccccttcgaaaaatatccaccgcattaactatataaccattatacaatcacaaatgaaataccttcaacaatataaataaatacatta |
494 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42095207 |
ttccccttcgaaaaatatccaccgcattaactatataaccattatacaatcacaaatgaaataccttcaacaatataaataaatacatta |
42095296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 8 - 146
Target Start/End: Original strand, 42094810 - 42094948
Alignment:
| Q |
8 |
gtaattacatgttatcaagcaagataagatactacaacaaatatcagcgacagaggatgcactatagacaaagaagtggaaaacaacaaaatatatacag |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42094810 |
gtaattacatgttatcaagcaagataagatactacaacaaatatcagcgacagaggatgtactatagacaaagaagtggaaaacaacaaaatatatacag |
42094909 |
T |
|
| Q |
108 |
cttcaaatcaaggcaagcctgatgcaaacacaatgtttc |
146 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42094910 |
cttcaaatcaaggcaagcctgatgcaaacacaatgtttc |
42094948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 97
Target Start/End: Complemental strand, 6957939 - 6957875
Alignment:
| Q |
33 |
aagatactacaacaaatatcagcgacagaggatgcactatagacaaagaagtggaaaacaacaaa |
97 |
Q |
| |
|
||||||| ||||||||||||| | ||| | |||| |||||||||||||||||| ||||||||||| |
|
|
| T |
6957939 |
aagatacaacaacaaatatcatcaacacatgatgtactatagacaaagaagtgaaaaacaacaaa |
6957875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 213 - 272
Target Start/End: Original strand, 35361044 - 35361100
Alignment:
| Q |
213 |
agcatcaccttctcatcaaagcttcactctccatcatcatcttcaacatatgaactcaaa |
272 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||| |
|
|
| T |
35361044 |
agcatcaccttctcatcaaagtctcactct---tcatcatcttcaacctatgaactcaaa |
35361100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 277
Target Start/End: Original strand, 48909236 - 48909302
Alignment:
| Q |
208 |
gtcaaagcatcaccttctcatcaaagcttcactctccatcatcatcttcaacatatgaactcaaacctag |
277 |
Q |
| |
|
||||||| ||| |||||||||||||| |||||||| ||||||||||||||| ||||||||| ||||| |
|
|
| T |
48909236 |
gtcaaagggtcatcttctcatcaaagcctcactctc---catcatcttcaacatttgaactcaagcctag |
48909302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 221 - 283
Target Start/End: Original strand, 1615422 - 1615481
Alignment:
| Q |
221 |
cttctcatcaaagcttcactctccatcatcatcttcaacatatgaactcaaacctagtcacac |
283 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||| | |||||| |||||||||| ||||| |
|
|
| T |
1615422 |
cttctcatcaaagcatcactct---tcatcatcttcagcgtatgaattcaaacctagccacac |
1615481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 472 times since January 2019
Visitors: 980