View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9468H-LTR4-TNT-insertion-3 (Length: 184)
Name: F9468H-LTR4-TNT-insertion-3
Description: F9468H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9468H-LTR4-TNT-insertion-3 |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 10 - 176
Target Start/End: Complemental strand, 49083758 - 49083592
Alignment:
| Q |
10 |
aagaaagttcaaattgtgtatcaaaatcaaacttggcggtattaccaccactgaaactacaatttgcatgattgttctttggatatttatcaaaagtggc |
109 |
Q |
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| T |
49083758 |
aagaaagttcaaattgtgtatcaaaatcaaacttggcggtattaccaccactgaaactacaatttgcatgattgttctttggatatttatcaaaagtggc |
49083659 |
T |
|
| Q |
110 |
catcaagtcaatagctccagcagaatggtcttctagttcattattgctttgatgaatctttgtatta |
176 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49083658 |
catcaagtcaatagctccagcagaatggtcttctagttcattattgctttgatgaatctttgtatta |
49083592 |
T |
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