View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9468H-LTR4-TNT-insertion-6 (Length: 559)
Name: F9468H-LTR4-TNT-insertion-6
Description: F9468H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9468H-LTR4-TNT-insertion-6 |
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Alignment Details
Target: chr5 (Bit Score: 502; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 40 - 549
Target Start/End: Original strand, 1502899 - 1503408
Alignment:
| Q |
40 |
tagtgatttgagagtcatccaaaatatttgaactcaagcatagaagattaaaatattttcacataatgtaggataaagaatgtagttatggtagcttatc |
139 |
Q |
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| T |
1502899 |
tagtgatttgagagtcatccaaaatatttgaactcaagcatagaagattaaaatattttcacataatgtaggataaagaatgtagttatggtagcttatc |
1502998 |
T |
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| Q |
140 |
atttattggaggacaagtgaaggggttgaaagaacctctagtatccctaacctgaagaaaattgaattggataattttcaagcatgaaatcaatttctac |
239 |
Q |
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| T |
1502999 |
atttattggaggacaagtgaaggggttgaaagaacctctagtatccctaacctgaagaaaattggattggataattttcaagcatgaaatcaatttctac |
1503098 |
T |
|
| Q |
240 |
ttcagaagaatctcttcaaaatttcattatatcaatcaacatattatcatgtataaaggtatgataacattgtgtccataataggtaaacaaccaaaaaa |
339 |
Q |
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| T |
1503099 |
ttcagaagaatctcttcaaaatttcattatttcaatcaacatattatcatgtataaaggtatgataacattgtgtccataataggtaaacaaccaaaaaa |
1503198 |
T |
|
| Q |
340 |
gaaattgataaattcaatctcttgtagcacaccaccatgtcttccaaattcaccacttttagcttgctaagtacagaatctgaggggcattcttttaacc |
439 |
Q |
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| T |
1503199 |
gaaattgataaattcaatctcttgtagcacaccaccatgtcttccaaattcaccacttttagcttgctaagtacagaatctgaggggcattcttttaacc |
1503298 |
T |
|
| Q |
440 |
aaaaatctaaatcttatgcatatatggaaagtttaatgaaacctttcaatttcaattgagtaataaaccttaaatatttgactgtaggggtggatgatat |
539 |
Q |
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| T |
1503299 |
aaaaatctaaatcttatgcatatatggaaagtttaatgaaacctttcaatttcaattgagtaataaaccttaaatatttgactgtaggggtggatgatat |
1503398 |
T |
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| Q |
540 |
gcaagtatta |
549 |
Q |
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| T |
1503399 |
gcaagtatta |
1503408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 387
Target Start/End: Complemental strand, 1506946 - 1506886
Alignment:
| Q |
327 |
aacaaccaaaaaagaaattgataaattcaatctcttgtagcacaccaccatgtcttccaaa |
387 |
Q |
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||||||||| || |||||||||||||||||||| ||||||||||| |||| |||||||| |
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| T |
1506946 |
aacaaccaagcaaaaaattgataaattcaatctcatgtagcacacccccatcccttccaaa |
1506886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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