View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9473H-LTR4-TNT-insertion-10 (Length: 602)
Name: F9473H-LTR4-TNT-insertion-10
Description: F9473H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9473H-LTR4-TNT-insertion-10 |
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| [»] scaffold0257 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 582; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 8 - 593
Target Start/End: Original strand, 26183825 - 26184410
Alignment:
| Q |
8 |
cctttgttccccataaagaggttgtggcaagttctttaagttttgctttgcaagacttttcagatgcgattcctcaaggtgtgttacctcattcaaacat |
107 |
Q |
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| T |
26183825 |
cctttgttccccataaagatgttgtggcaagttctttaagttttgctttgcaagacttttcagatgcgattcctcaaggtgtgttacctcattcaaacat |
26183924 |
T |
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| Q |
108 |
acctgtgttggaattggcgtcagatgtagcgcacaatgacatacaaaattttgaagaggaaagaatacttcaggaaactaggatcgttgacattccaaag |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26183925 |
acctgtgttggaattggcgtcagatgtagcgcacaatgacatacaaaattttgaagaggaaagaatacttcaggaaactaggatcgttgacattccaaag |
26184024 |
T |
|
| Q |
208 |
gatcatgttgattttgttccgcctgtttacaccgttgagcacgttgacgtgcatgaagaggtgggtggtaatgttttgtcccaggttagggaggttagtt |
307 |
Q |
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| T |
26184025 |
gatcatgttgattttgttccgcctgtttacaccgttgagcacgttgacgtgcatgaagaggtgggtggtaatgttttgtcccaggttagggaggttagtt |
26184124 |
T |
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| Q |
308 |
cgtccactcagaccacagctgcacaagctgacactatggtgtcccctcaagatttggcagcggtctagttgcctgtacaacattttccccacgaagatgc |
407 |
Q |
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| T |
26184125 |
cgtccactcagaccacagctgcacaagctgacactatggtgtcccctcaagatttggcagcggtctagttgcctgtacaacattttccccacgaagatgc |
26184224 |
T |
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| Q |
408 |
agatattgttgtcgattccgcacctatcagcctcctgtgacaaattctgaaatggttatggatgcctcattggatggaacttgcggtgacatcacttcaa |
507 |
Q |
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| T |
26184225 |
agatattgttgtcgattccgcacctatcagcctcctgtgacaaattctgaaatggttatggatgcctcattggatggaacttgcggtgacatcacttcaa |
26184324 |
T |
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| Q |
508 |
gtcacattattacctcccgatagccggacccaaaatagtaggtgttgggatcacgtctgtcgtaactgaatccaccgttacaattg |
593 |
Q |
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| T |
26184325 |
gtcacattattacctcccgatagccggacccaaaatagtaggtgttgggatcacgtctgtcgtaactgaatccaccgttacaattg |
26184410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0257 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: scaffold0257
Description:
Target: scaffold0257; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 34 - 370
Target Start/End: Original strand, 15019 - 15354
Alignment:
| Q |
34 |
gcaagttctttaagttttgctttgcaagacttttcagatgcgattcctcaaggtgtgttacctcattcaaacatacctgtgttggaattggcgtcagatg |
133 |
Q |
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| T |
15019 |
gcaagttcttttagttttgctttgcaaaatgtttcaaacgtgattcctctagg-gtgtttcctcattcggacatccctgtgttagaattggcatcagagg |
15117 |
T |
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| Q |
134 |
tagcgcacaatgacatacaaaattttgaagaggaaagaatacttcaggaaactaggatcgttgacattccaaaggatcatgttgattttgttccgcctgt |
233 |
Q |
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| T |
15118 |
cagtgcacgatgatgtgcaaatatttgacgaggagagaattcttcaagaaactcagaatgttgtcgttccaaagagtctggttgtttcggttccgcctat |
15217 |
T |
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| Q |
234 |
ttacaccgttgagcacgttgacgtgcatgaagaggtgggtggtaatgttttgtcccaggttagggaggttagttcgtccactcagaccacagctgcacaa |
333 |
Q |
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|||||| ||||||| |||||| ||||||||||| ||| ||||||||||||||||| | | || ||| | || | |||||||| ||| || ||||| |
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| T |
15218 |
ttacactattgagcatgttgacatgcatgaagagttggatggtaatgttttgtcccttatcaagggggtgactttggtcactcagatcacgtcttcacaa |
15317 |
T |
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| Q |
334 |
gctgacactatggtgtcccctcaagatttggcagcgg |
370 |
Q |
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| T |
15318 |
gcaaacaccatggtgtcccctcaagttgtggcagcgg |
15354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 527 - 587
Target Start/End: Original strand, 24764798 - 24764858
Alignment:
| Q |
527 |
atagccggacccaaaatagtaggtgttgggatcacgtctgtcgtaactgaatccaccgtta |
587 |
Q |
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| T |
24764798 |
atagccggacccaaaatagttgttgttgggatcacctctaccgtaaccaaatccaccgtta |
24764858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 107
Target Start/End: Original strand, 24372331 - 24372390
Alignment:
| Q |
48 |
ttttgctttgcaagacttttcagatgcgattcctcaaggtgtgttacctcattcaaacat |
107 |
Q |
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| T |
24372331 |
tttttctttgcaaaacgtttcggatgcaattcctcaaggtgtgtttcctcattcagacat |
24372390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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