View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9473H-LTR4-TNT-insertion-11 (Length: 431)
Name: F9473H-LTR4-TNT-insertion-11
Description: F9473H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9473H-LTR4-TNT-insertion-11 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 414; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 8 - 421
Target Start/End: Complemental strand, 10761763 - 10761350
Alignment:
| Q |
8 |
taaaacaacccaaaatttaacagaaagcaaacatttgaaattgcttctatatatttatagtgagcatataataatcacaagttaatttctaaatctaata |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10761763 |
taaaacaacccaaaatttaacagaaagcaaacatttgaaattgcttctatatatttatagtgagcatataataatcacaagttaatttctaaatctaata |
10761664 |
T |
|
| Q |
108 |
tacagaaaaaccatatggggagtttgtttcaaaaacttctgttattcctgatcaacaatgtggaaattgtattcatagttgcatagtgaaatatggaatt |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10761663 |
tacagaaaaaccatatggggagtttgtttcaaaaacttctgttattcctgatcaacaatgtggaaattgtattcatagttgcatagtgaaatatggaatt |
10761564 |
T |
|
| Q |
208 |
gaagaaaatgcttatgttgctagagacattgatactaggtatcgggtccatgagcgtgtctgcaagctggtgataatccttttatgatcacatctaatag |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10761563 |
gaagaaaatgcttatgttgctagagacattgatactaggtatcgggtccatgagcgtgtctgcaagctggtgataatccttttatgatcacatctaatag |
10761464 |
T |
|
| Q |
308 |
taatgtcattcttgcaactttaattcttgaaatgtatgcaaaatgcggtagcttgaaaaatgcaagaagtgaaacatttttgcttggaaatgttaccatg |
407 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10761463 |
taatgtcattcttgcaactttaattcttgaaatgtatgcaaaatgcggtagcttgaaaaatgcaagaagtgaaacatttttgcttggaaatgttaccatg |
10761364 |
T |
|
| Q |
408 |
gtgaatattgatta |
421 |
Q |
| |
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|||||||||||||| |
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| T |
10761363 |
gtgaatattgatta |
10761350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 8 - 421
Target Start/End: Complemental strand, 10739421 - 10739007
Alignment:
| Q |
8 |
taaaacaacccaaaatttaacagaaagcaaacatttgaaattgcttctatatatttatagtgagcatataataatcacaagttaatttctaaatctaata |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||| |
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|
| T |
10739421 |
taaaacaacccaaaatttaacagaaagcaaacatttcaaattgcttctatatatttatagtgtgcatataataatcacaatttaatttataaatctaata |
10739322 |
T |
|
| Q |
108 |
tacagaaaaaccatatggggagtttgtttcaaaaacttctgttattcctgatcaacaatgtggaaattgtattcatagttgcatagtgaaatatggaatt |
207 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
10739321 |
cacagaaaaaccatatggggaatttgtttcaaaaacttctgttattcctgatcaacaatgtggaaattgtattcatagttgcatagtgaaatatagaatt |
10739222 |
T |
|
| Q |
208 |
gaagaaaatgcttatgttgctagagacattgatactaggtatcgggtccatgagcgtgtctgcaa-gctggtgataatccttttatgatcacatctaata |
306 |
Q |
| |
|
|||| | |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
10739221 |
gaagcagatgcttatgttgctagagacattgatactaggaatcgggtccatcagcgtgtctgcaaggctggtgataatccttttatgatcacatctaata |
10739122 |
T |
|
| Q |
307 |
gtaatgtcattcttgcaactttaattcttgaaatgtatgcaaaatgcggtagcttgaaaaatgcaagaagtgaaacatttttgcttggaaatgttaccat |
406 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
10739121 |
gtaatgtcattcttgcaactttacttcttgaaatgtatgcaaaatgcggtagcttgaaaattgcaagaagtgaaacatttttgcttggaaatgttaccat |
10739022 |
T |
|
| Q |
407 |
ggtgaatattgatta |
421 |
Q |
| |
|
||||||||||||||| |
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|
| T |
10739021 |
ggtgaatattgatta |
10739007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 8 - 225
Target Start/End: Original strand, 10605971 - 10606192
Alignment:
| Q |
8 |
taaaacaacccaaaatttaacagaaagcaaacatttgaaattgcttctatatatttatagtgagcatataataatcacaagttaatttctaaatctaata |
107 |
Q |
| |
|
||||||| |||||||||| ||||| ||||||||| |||||||||||||||||| |||| |||||||||||||| |||| | |||| ||||||| | | |
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|
| T |
10605971 |
taaaacactccaaaatttataagaaatcaaacatttcaaattgcttctatatattcatagcgagcatataataattacaattgcatttataaatctgaca |
10606070 |
T |
|
| Q |
108 |
tacagaa----aaaccatatggggagtttgtttcaaaaacttctgttattcctgatcaacaatgtggaaattgtattcatagttgcatagtgaaatatgg |
203 |
Q |
| |
|
||||||| ||| | ||||||| ||| ||| ||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
10606071 |
tacagaagaaaaaaacctatgggggatttctttacaaaacttatgttattcctgataaacattgtggaaattgtattcatagttgcatagtgaaatatgg |
10606170 |
T |
|
| Q |
204 |
aattgaagaaaatgcttatgtt |
225 |
Q |
| |
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|||||| |||||| |||||||| |
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| T |
10606171 |
aattgaggaaaattcttatgtt |
10606192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 260 - 374
Target Start/End: Original strand, 10606395 - 10606510
Alignment:
| Q |
260 |
agcgtgtctgcaag-ctggtgataatccttttatgatcacatctaatagtaatgtcattcttgcaactttaattcttgaaatgtatgcaaaatgcggtag |
358 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||||||| || | |||||||||||||||| ||||||||||||||||||||||| ||||| |
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|
| T |
10606395 |
agcgtgtctgcaaggctggtgataatccttttatggtcacatctaatactagtatcattcttgcaactttcattcttgaaatgtatgcaaaatgtggtag |
10606494 |
T |
|
| Q |
359 |
cttgaaaaatgcaaga |
374 |
Q |
| |
|
|||||| | ||||||| |
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| T |
10606495 |
cttgaatattgcaaga |
10606510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 297 - 374
Target Start/End: Original strand, 10608144 - 10608221
Alignment:
| Q |
297 |
acatctaatagtaatgtcattcttgcaactttaattcttgaaatgtatgcaaaatgcggtagcttgaaaaatgcaaga |
374 |
Q |
| |
|
|||||| || |||||| |||||||||||||| ||||||||||||||||||| |||| |||||| |||| | ||||||| |
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|
| T |
10608144 |
acatctgattgtaatgacattcttgcaacttcaattcttgaaatgtatgcagaatgtggtagcctgaatattgcaaga |
10608221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 10607485 - 10607559
Alignment:
| Q |
8 |
taaaacaacccaaaatttaacagaaagcaaacatttgaaattgcttctatatatttatagtgagcatataataat |
82 |
Q |
| |
|
|||||| |||||||||||| ||||||||||| | | | ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
10607485 |
taaaaccacccaaaatttataagaaagcaaacttattagtttgcttctatatattcatagtgagcatataataat |
10607559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 10613894 - 10613973
Alignment:
| Q |
8 |
taaaacaacccaaaatttaacagaaagcaaacatttgaaattgcttctatatatttatagtgagcatataataatcacaa |
87 |
Q |
| |
|
||||||||||||||| || |||| |||||||| | || ||||||||||||||| ||| ||||||||||||||| |||| |
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|
| T |
10613894 |
taaaacaacccaaaaaatatgagaaggcaaacatatcaatttgcttctatatattcatactgagcatataataataacaa |
10613973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 352
Target Start/End: Complemental strand, 9807811 - 9807759
Alignment:
| Q |
300 |
tctaatagtaatgtcattcttgcaactttaattcttgaaatgtatgcaaaatg |
352 |
Q |
| |
|
|||||||||||||| |||||||||||| ||| ||||||||||||| ||||| |
|
|
| T |
9807811 |
tctaatagtaatgttattcttgcaactgctattgttgaaatgtatgcgaaatg |
9807759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 352
Target Start/End: Original strand, 12903595 - 12903665
Alignment:
| Q |
282 |
aatccttttatgatcacatctaatagtaatgtcattcttgcaactttaattcttgaaatgtatgcaaaatg |
352 |
Q |
| |
|
|||||||||||| |||||||| | |||| ||||||||||||||| |||||||||| ||||||||||| |
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|
| T |
12903595 |
aatccttttatggccacatctatttttaatttcattcttgcaacttccattcttgaaacatatgcaaaatg |
12903665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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