View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9473H-LTR4-TNT-insertion-12 (Length: 353)
Name: F9473H-LTR4-TNT-insertion-12
Description: F9473H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9473H-LTR4-TNT-insertion-12 |
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Alignment Details
Target: chr6 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 8 - 345
Target Start/End: Complemental strand, 4182707 - 4182370
Alignment:
| Q |
8 |
tatacttgttctggttaacaatgattttacgagttattgttaaattatggtatgtggaatatgcggcttgagatattgctatgttcttttaatttattta |
107 |
Q |
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| T |
4182707 |
tatacttgttctggttaacaatgattttacgagttattgttaaattatggtatgtggaatatgcggcttgagatattgctatgttcttttaatttattta |
4182608 |
T |
|
| Q |
108 |
tgggttagagttgcggttttgtcatcgtgcactatattttatatagttagtaaattattcaaatcttccaccatagattctcttatttttactctactac |
207 |
Q |
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| T |
4182607 |
tgggttagagttgcggttttgtcatcgtgcactatattttatatagttagtaaattattcaaatcttccaccatagattctcttatttttactctactac |
4182508 |
T |
|
| Q |
208 |
tattttcaatatcatatagagatcgaatatttaaagttctgagacatccctttctggtagttgcttggtaatggtttgtatcttgcagttttaacagttg |
307 |
Q |
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| T |
4182507 |
tattttcaatatcatatagagatcgaatatttaaagttctgagacatccctttctggtagttgcttggtaatggtttgtatcttgcagttttaacagttg |
4182408 |
T |
|
| Q |
308 |
tctcatttacatctaatttatcttccaactctaaatta |
345 |
Q |
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| T |
4182407 |
tctcatttacatctaatttatcttccaactctaaatta |
4182370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 8 - 345
Target Start/End: Complemental strand, 4743551 - 4743214
Alignment:
| Q |
8 |
tatacttgttctggttaacaatgattttacgagttattgttaaattatggtatgtggaatatgcggcttgagatattgctatgttcttttaatttattta |
107 |
Q |
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| T |
4743551 |
tatacttgttctggttaacaatgattttacgagttattgttaaattatggtatgtggaatatgcggcttgagatattgctatgttcttttaatttattta |
4743452 |
T |
|
| Q |
108 |
tgggttagagttgcggttttgtcatcgtgcactatattttatatagttagtaaattattcaaatcttccaccatagattctcttatttttactctactac |
207 |
Q |
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| T |
4743451 |
ttggttagagttgcggttttgtcatcgtgcactacattttatatagttagtaaattattcaaatcttccaccatagattctcttatttttactctactac |
4743352 |
T |
|
| Q |
208 |
tattttcaatatcatatagagatcgaatatttaaagttctgagacatccctttctggtagttgcttggtaatggtttgtatcttgcagttttaacagttg |
307 |
Q |
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| T |
4743351 |
tattttcaatatcataaagagatcgaatatttaaagttctgagacatccctttctggtagttgcttggtaatggtttgtatcttgcagttttaacagttg |
4743252 |
T |
|
| Q |
308 |
tctcatttacatctaatttatcttccaactctaaatta |
345 |
Q |
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| T |
4743251 |
tctcatttacatctaatttatcttccaactctaaatta |
4743214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 51756453 - 51756349
Alignment:
| Q |
16 |
ttctggttaacaatgattttacgagttattgttaaattatggtatgtggaatatgcggcttgagatattgctatgttcttttaatttatttatgggttag |
115 |
Q |
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||||||||| |||||| ||||| ||||||||||| ||||| | || | |||||| ||||||||| ||||||||||| |||| |||||||| | ||||| |
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| T |
51756453 |
ttctggttaccaatgacattacgggttattgttaatttatgatgtgagaaatatgaggcttgagaaattgctatgttattttcatttatttgttagttag |
51756354 |
T |
|
| Q |
116 |
agttg |
120 |
Q |
| |
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||||| |
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| T |
51756353 |
agttg |
51756349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 156
Target Start/End: Original strand, 51855297 - 51855432
Alignment:
| Q |
15 |
gttctggttaacaatgattttacgagttattgttaaattatggtatgtggaatatgcggcttgagatattgctatgttcttttaatttatttatgggtta |
114 |
Q |
| |
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|||||||||| |||||| || ||| |||| |||| | ||||||| | ||||||||||||||||||| | ||||| ||| ||| ||||| |||| |||| |
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| T |
51855297 |
gttctggttaccaatgacttcacgggttactgttgatttatggtgtatggaatatgcggcttgagaaactgctacgttatttcaattttcttattagtta |
51855396 |
T |
|
| Q |
115 |
gagttgcggttttgtcatcgtgcactatattttatatagtta |
156 |
Q |
| |
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|| |||||||||||||||| || |||||||||||||| |
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| T |
51855397 |
ga------gttttgtcatcgtgcattacattttatatagtta |
51855432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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