View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9473H-LTR4-TNT-insertion-13 (Length: 321)
Name: F9473H-LTR4-TNT-insertion-13
Description: F9473H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9473H-LTR4-TNT-insertion-13 |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 9 - 311
Target Start/End: Complemental strand, 25901636 - 25901334
Alignment:
| Q |
9 |
ggagtgcagacacaagggttgaaatttgttgtgcacggaagccagggttgttgatatccacagtaaacacattggaagcatcattaggccttgagattca |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25901636 |
ggagtgcagacacaagggttgaaatttgttgtgcacggaagccagggttgttgatatccacagtaaacacattggaagcatcattaggccttgagattca |
25901537 |
T |
|
| Q |
109 |
acaatatgttattagctgtttcaatgatttcacaatgcaggcttcttgctcagaggtacattagttactactcccttggttacattttaattgtcgcatt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25901536 |
acaatatgttattagctgtttcaatgatttcacaatgcaggcttcttgctcagaggtacattagttactactcccttggttacattttaattgtcgcatt |
25901437 |
T |
|
| Q |
209 |
tgtagtaaaaatgtgttttcatttctttgccatttttaaagttcaatgtgtatgtaaataacttttatttgacggttaaaaaggagccgagagagtaata |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25901436 |
tgtagtaaaaatgtgttttcatttctttgccatttttaaagttcaatgtgtatgtaaataacttttatttgacggttaaaaaggagccgagagagtaata |
25901337 |
T |
|
| Q |
309 |
tta |
311 |
Q |
| |
|
||| |
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| T |
25901336 |
tta |
25901334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 17 - 257
Target Start/End: Complemental strand, 52002647 - 52002406
Alignment:
| Q |
17 |
gacacaagggttgaaatttgttgtgcacggaagccagggttgttgatatccacagtaaacacattggaagcatcattaggccttgagattcaacaatatg |
116 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| || |
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| T |
52002647 |
gacacaagggttgaaatttgttgtgcagggaagccagggttgttgctatccacagtaaacacattggaagcat---taggccttgagattcaacaatgtg |
52002551 |
T |
|
| Q |
117 |
ttattagctgtttcaatgatttcacaatgcaggcttcttgctcagaggtacattagttact----actcccttggttacattttaattgtcgcatttgta |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||| ||||| |||||| |||||| ||||| |
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| T |
52002550 |
ttattagctgtttcaatgatttcacaatgcaggcttcttgctcagaggtacattagttacttactaattccttagttactttttaaacgtcgcagttgta |
52002451 |
T |
|
| Q |
213 |
gtaaaaatgtgttttcatttctttgccatttttaaagttcaatgt |
257 |
Q |
| |
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||||||||||||||||||||||| | | ||||||||||||||||| |
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| T |
52002450 |
gtaaaaatgtgttttcatttcttcgtcgtttttaaagttcaatgt |
52002406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 311
Target Start/End: Complemental strand, 52002311 - 52002259
Alignment:
| Q |
259 |
tatgtaaataacttttatttgacggttaaaaaggagccgagagagtaatatta |
311 |
Q |
| |
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|||||||| |||||| ||||||| ||||||||||||||||| |||||||||| |
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| T |
52002311 |
tatgtaaacaactttaatttgactgttaaaaaggagccgaggaagtaatatta |
52002259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 47 - 165
Target Start/End: Original strand, 29010065 - 29010180
Alignment:
| Q |
47 |
aagccagggttgttgatatccacagtaaacacattggaagcatcattaggccttgagattcaacaatatgttattagctgtttcaatgatttcacaatgc |
146 |
Q |
| |
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|||||||| ||||| | || ||||| |||||||| ||||||| |||||||||||||||| || | |||||| ||| ||||||||||||| || ||| |
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| T |
29010065 |
aagccaggattgttactgtcaacagtgaacacattagaagcat---taggccttgagattcaccagtgtgttataagcagtttcaatgatttttcattgc |
29010161 |
T |
|
| Q |
147 |
aggcttcttgctcagaggt |
165 |
Q |
| |
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| || |||||||||||||| |
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| T |
29010162 |
aagcatcttgctcagaggt |
29010180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 47 - 165
Target Start/End: Complemental strand, 13148852 - 13148737
Alignment:
| Q |
47 |
aagccagggttgttgatatccacagtaaacacattggaagcatcattaggccttgagattcaacaatatgttattagctgtttcaatgatttcacaatgc |
146 |
Q |
| |
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|||||||| ||||| | || ||||| |||||||| ||||||| |||||||||||||||| || | |||||| ||| ||||||||||||| || ||| |
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| T |
13148852 |
aagccaggattgttactgtcaacagtgaacacattagaagcat---taggccttgagattcatcagtgtgttataagcagtttcaatgatttttcattgc |
13148756 |
T |
|
| Q |
147 |
aggcttcttgctcagaggt |
165 |
Q |
| |
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| || |||||||||||||| |
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| T |
13148755 |
aagcatcttgctcagaggt |
13148737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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