View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9473H-LTR4-TNT-insertion-2 (Length: 401)
Name: F9473H-LTR4-TNT-insertion-2
Description: F9473H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9473H-LTR4-TNT-insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 85 - 392
Target Start/End: Complemental strand, 51292744 - 51292437
Alignment:
| Q |
85 |
attcgggcattcgattatgataataatgctcgggtttacgtgtctgattacttgttattatgaatctagatagtgtcgctaatattcgtttatgtttttg |
184 |
Q |
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| T |
51292744 |
attcgggcattcgattatgataataatgctcgggtttacgtgtctgattacttgttattatgaatctagatagtgtcgctaatattcgtttatgtttttg |
51292645 |
T |
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| Q |
185 |
aattggtagttcttatatgtttattaaggtattttctttttcggcatcaatcatgtttttagtttgttaatcgtttatgtttgtggattgtaatattata |
284 |
Q |
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| T |
51292644 |
aattggtagttcttatatgtttattaaggtattttctttttcggcatcaatcatgtttttagtttgttaatcgtttatgtttgtggattgtaatattata |
51292545 |
T |
|
| Q |
285 |
ttctatagtatacatacatgtgctcatgataaagaggttggttctttttgaattgtgtacatgtgtttgtttttggactatgctgtgcctgctctatctg |
384 |
Q |
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| T |
51292544 |
ttctatagtatacatacatgtgctcatgataaagaggttggttctttttgaattgtgtacatgtgtttgtttttggactatgctgtgcctgctctatctg |
51292445 |
T |
|
| Q |
385 |
cccaattg |
392 |
Q |
| |
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|||||||| |
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| T |
51292444 |
cccaattg |
51292437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 39
Target Start/End: Complemental strand, 51292821 - 51292790
Alignment:
| Q |
8 |
caaaaccgacatggtgcatcctctgttcgata |
39 |
Q |
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| T |
51292821 |
caaaaccgacatggtgcatcctctgttcgata |
51292790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 206
Target Start/End: Complemental strand, 16352705 - 16352606
Alignment:
| Q |
103 |
gataataatgctcgggtttacgtgtctgattacttgttattatgaatctagatagtgtcgctaatattcgtttatgtttttgaattggtagttcttatat |
202 |
Q |
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| T |
16352705 |
gataataatgcgtggttttatgtgtctgattgattgttattctgaatccagatagtgtg----atattcgtttatgattttgaattgatagtttttattt |
16352610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 160
Target Start/End: Complemental strand, 4298400 - 4298338
Alignment:
| Q |
98 |
attatgataataatgctcgggtttacgtgtctgattacttgttattatgaatctagatagtgt |
160 |
Q |
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| T |
4298400 |
attatgataataatgctcggttttacatgtctgattaatttttactctgaatcctgatagtgt |
4298338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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