View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9473H-LTR4-TNT-insertion-3 (Length: 270)
Name: F9473H-LTR4-TNT-insertion-3
Description: F9473H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9473H-LTR4-TNT-insertion-3 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 10 - 260
Target Start/End: Original strand, 31415918 - 31416168
Alignment:
| Q |
10 |
ccatgcttatacacaacgacaataattatcccgaatttatcaagaatgaaaacaaaccaatcaaaatcagggttggtggggagaaaaatatggaaaatcc |
109 |
Q |
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| T |
31415918 |
ccatgcttatacacaacgacaataattatcccgaatttatcaagaatgaaaacaaaccaatcaaaatcagggttggtggggagaaaaatatggaaaatcc |
31416017 |
T |
|
| Q |
110 |
taaaatagtgagtggcattagcatacatgcacatgtatcgtgaaacagtcgggaagcaatttttcgttttaaatagcatttttgatatnnnnnnnnnnnn |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31416018 |
taaaatagtgagtggcattagcatacatgcacatgtatcgtgaaacagtcgggaagcaatttttcgttttaaatagcatttttgatataaaaaagaaaaa |
31416117 |
T |
|
| Q |
210 |
nnnnnnntgctaaacaacccaagaggatttatcccgatagcatcaagaatt |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31416118 |
aggaaaatgctaaacaacccaagaggatttatcccgatagcatcaagaatt |
31416168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 90 - 195
Target Start/End: Original strand, 52329193 - 52329297
Alignment:
| Q |
90 |
gagaaaaatatggaaaatcctaaaatagtgagtggcattagcatacatgc-acatgtatcgtgaaacagtcgggaagcaatttttcgttttaaatagcat |
188 |
Q |
| |
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|||||||||||||||||||||||||||||| || | |||||||||||| ||||||||||||||||| ||||||||| |||||| |||||||||||| |
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| T |
52329193 |
gagaaaaatatggaaaatcctaaaatagtggatg--agtagcatacatgccacatgtatcgtgaaacactcgggaagcttattttcgctttaaatagcat |
52329290 |
T |
|
| Q |
189 |
ttttgat |
195 |
Q |
| |
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||||||| |
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|
| T |
52329291 |
ttttgat |
52329297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 166
Target Start/End: Complemental strand, 7938512 - 7938435
Alignment:
| Q |
88 |
gggagaaaaatatggaaaatcctaaaatagtgagtggcattagcatacatg-cacatgtatcgtgaaacagtcgggaagc |
166 |
Q |
| |
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|||||||||||||||||||||||||||||||| || | | ||||||||| |||||||||||| ||||||||| ||||| |
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| T |
7938512 |
gggagaaaaatatggaaaatcctaaaatagtggatg--agtggcatacatgccacatgtatcgtaaaacagtcgagaagc |
7938435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 119
Target Start/End: Original strand, 49278481 - 49278516
Alignment:
| Q |
84 |
ggtggggagaaaaatatggaaaatcctaaaatagtg |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
49278481 |
ggtggggagaaaaatatggaaaatcctaaaatagtg |
49278516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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