View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9473H-LTR4-TNT-insertion-4 (Length: 554)
Name: F9473H-LTR4-TNT-insertion-4
Description: F9473H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9473H-LTR4-TNT-insertion-4 |
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Alignment Details
Target: chr3 (Bit Score: 515; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 10 - 545
Target Start/End: Complemental strand, 47369132 - 47368597
Alignment:
| Q |
10 |
atgtatgtggtagaagagatttggcaaatccaccgtatgtgtacattatctatttataaagcatgatttggagttatgtggtctccaactcaatgtcacc |
109 |
Q |
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| T |
47369132 |
atgtatgtggtagaagagatttggcaaatccaccgtatgtgtacattatctatttataaagcatgatttggagttatgtggtctccaactcaatgtcacc |
47369033 |
T |
|
| Q |
110 |
aagacactgaagttgcttatctgttgtaaattacgttattaatctttatgtcacatacatcaaatcacatcatagtgtcgcttttttaagttagtttcta |
209 |
Q |
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| T |
47369032 |
aagacactgaagttgcttatctgttgtaaattacgttattaatctttatgtcacatacatcaaatcacatcatagtgtcgcttttttaagttagtttcta |
47368933 |
T |
|
| Q |
210 |
aaatatctacatttatatctacataacgtgatttgattggatgcatgtatacaataagattagaatgattgtgtatacaaattaaatctataaactattt |
309 |
Q |
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| T |
47368932 |
aaatatctacatttatatctacataacgtgatttgattggatgcatgtatacaataagattagaatgattgtgtatacaaattaaatctataaactattt |
47368833 |
T |
|
| Q |
310 |
agaggatacacccaactatttggaaacatggaggaaaatttataagcagaaaaggaatgcctgtaaagtataaaccaaaaaagttaagaaattaacacnn |
409 |
Q |
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| T |
47368832 |
agaggatacacccaactatttggaaacatggaggaaaatttataagcagaaaaggaatgcctgtaaagtataaaccaaaaaagttaagaaattaacactt |
47368733 |
T |
|
| Q |
410 |
nnnnnctctgtaaatgaggttccataataccatttcttgatactgtaaacaccgaaaaatgatgtatattgatgcaatactacttttattattttataga |
509 |
Q |
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| T |
47368732 |
tttttctctgtaaatgaggttccataataccatttcttgatactgtaaacaccgaaaaatgatgtatattgatgcaatactacttttattattttataga |
47368633 |
T |
|
| Q |
510 |
cacactcacaactacactattctctgttcccaattg |
545 |
Q |
| |
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| T |
47368632 |
cacactcacaactacactattctctgttcccaattg |
47368597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 190 - 257
Target Start/End: Original strand, 9685080 - 9685147
Alignment:
| Q |
190 |
cttttttaagttagtttctaaaatatctacatttatatctacataacgtgatttgattggatgcatgt |
257 |
Q |
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||||| |||||||||||||||||||||| || ||||||||||| | ||||||||||| |||||||| |
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| T |
9685080 |
cttttataagttagtttctaaaatatctccagaaatatctacatatcttgatttgattgaatgcatgt |
9685147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 168 - 227
Target Start/End: Original strand, 8132208 - 8132266
Alignment:
| Q |
168 |
atcaaatcacatcatagtgtcgcttttttaagttagtttctaaaatatctacatttatat |
227 |
Q |
| |
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||||||||||||||||||| | ||||| |||||||||||||||||||||| ||| ||||| |
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| T |
8132208 |
atcaaatcacatcatagtg-cacttttataagttagtttctaaaatatctccatatatat |
8132266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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