View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9473H-LTR4-TNT-insertion-5 (Length: 139)
Name: F9473H-LTR4-TNT-insertion-5
Description: F9473H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9473H-LTR4-TNT-insertion-5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 122; Significance: 6e-63; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 6e-63
Query Start/End: Original strand, 9 - 130
Target Start/End: Original strand, 11875346 - 11875467
Alignment:
| Q |
9 |
tcaagttgttggaaaacaacaagaccaggcaaagaaagctgtttcaatttctcaacagcttcaagacctctcttttcatctcttgcagtaagcaccacag |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11875346 |
tcaagttgttggaaaacaacaagaccaggcaaagaaagctgtttcaatttctcaacagcttcaagacctctcttttcatctcttgcagtaagcaccacag |
11875445 |
T |
|
| Q |
109 |
tgatccctttagaagccaattg |
130 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
11875446 |
tgatccctttagaagccaattg |
11875467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 3e-58
Query Start/End: Original strand, 9 - 130
Target Start/End: Original strand, 11878955 - 11879076
Alignment:
| Q |
9 |
tcaagttgttggaaaacaacaagaccaggcaaagaaagctgtttcaatttctcaacagcttcaagacctctcttttcatctcttgcagtaagcaccacag |
108 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11878955 |
tcaagttgatgaaaaacaacaagaccaggcaaagaaagctgtttcaatttctcaacagcttcaagacctctcttttcatctcttgcagtaagcaccacag |
11879054 |
T |
|
| Q |
109 |
tgatccctttagaagccaattg |
130 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
11879055 |
tgatccctttagaagccaattg |
11879076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 114; E-Value: 3e-58
Query Start/End: Original strand, 9 - 130
Target Start/End: Original strand, 11893962 - 11894083
Alignment:
| Q |
9 |
tcaagttgttggaaaacaacaagaccaggcaaagaaagctgtttcaatttctcaacagcttcaagacctctcttttcatctcttgcagtaagcaccacag |
108 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11893962 |
tcaagttgatgaaaaacaacaagaccaggcaaagaaagctgtttcaatttctcaacagcttcaagacctctcttttcatctcttgcagtaagcaccacag |
11894061 |
T |
|
| Q |
109 |
tgatccctttagaagccaattg |
130 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
11894062 |
tgatccctttagaagccaattg |
11894083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 114; E-Value: 3e-58
Query Start/End: Original strand, 9 - 130
Target Start/End: Original strand, 11896371 - 11896492
Alignment:
| Q |
9 |
tcaagttgttggaaaacaacaagaccaggcaaagaaagctgtttcaatttctcaacagcttcaagacctctcttttcatctcttgcagtaagcaccacag |
108 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11896371 |
tcaagttgatgaaaaacaacaagaccaggcaaagaaagctgtttcaatttctcaacagcttcaagacctctcttttcatctcttgcagtaagcaccacag |
11896470 |
T |
|
| Q |
109 |
tgatccctttagaagccaattg |
130 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
11896471 |
tgatccctttagaagccaattg |
11896492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 98; E-Value: 1e-48
Query Start/End: Original strand, 9 - 130
Target Start/End: Original strand, 11868882 - 11869003
Alignment:
| Q |
9 |
tcaagttgttggaaaacaacaagaccaggcaaagaaagctgtttcaatttctcaacagcttcaagacctctcttttcatctcttgcagtaagcaccacag |
108 |
Q |
| |
|
|||||||| || ||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11868882 |
tcaagttgatgaaaaacaacaagaccaggcagagaaagatgtttcagcttctcaacagcttcaagacctctcttttcatctcttgcagtaagcaccacag |
11868981 |
T |
|
| Q |
109 |
tgatccctttagaagccaattg |
130 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
11868982 |
tgatccctttagaagccaattg |
11869003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 71 - 106
Target Start/End: Original strand, 12014552 - 12014587
Alignment:
| Q |
71 |
aagacctctcttttcatctcttgcagtaagcaccac |
106 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||| |
|
|
| T |
12014552 |
aagacctcttttctcatctcttgcagtaagcaccac |
12014587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 51 - 130
Target Start/End: Complemental strand, 25859068 - 25858989
Alignment:
| Q |
51 |
ttcaatttctcaacagcttcaagacctctcttttcatctcttgcagtaagcaccacagtgatccctttagaagccaattg |
130 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||||| | |||||||| |||| || |||||| ||||||| |
|
|
| T |
25859068 |
ttcaatttatcaacagcttcaagacctctcttctcatctcttgctgccagcaccactttgataccattagaaaccaattg |
25858989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 10520 times since January 2019
Visitors: 10028