View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9473H-LTR4-TNT-insertion-6 (Length: 228)
Name: F9473H-LTR4-TNT-insertion-6
Description: F9473H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9473H-LTR4-TNT-insertion-6 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 8 - 218
Target Start/End: Complemental strand, 4704885 - 4704675
Alignment:
| Q |
8 |
gtttccgcaaaattgatgtacacaattaaagacaacaatatgatactccatcagtttattatgagtgccatatttgaaatatttttccatctcaattttt |
107 |
Q |
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| T |
4704885 |
gtttccgcaaaattgatgtacacaattaaagacaacaatatgatactccatcagtttattatgagtgccatatttgaaatatttttccatctcaattttt |
4704786 |
T |
|
| Q |
108 |
ccgtctcaaatttttagtcactttagaatatcaaagcaaatatttattatcttttttcaataataccctcatttatataaatagtctgtccacctatcta |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4704785 |
ccgtctcaaatttttagtcactttagaatatcaaagcaaatatttattatcttttttcaataataccctcatttatataaatagtctgtccacctatcta |
4704686 |
T |
|
| Q |
208 |
ctcctatatta |
218 |
Q |
| |
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||||||||||| |
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| T |
4704685 |
ctcctatatta |
4704675 |
T |
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