View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9482H-LTR4-TNT-insertion-10 (Length: 768)
Name: F9482H-LTR4-TNT-insertion-10
Description: F9482H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9482H-LTR4-TNT-insertion-10 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 691; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 691; E-Value: 0
Query Start/End: Original strand, 8 - 768
Target Start/End: Original strand, 3015513 - 3016274
Alignment:
| Q |
8 |
gcacatgctagttcttttgttagaagaggtactgaacaacttcatgaggcaagagagcatcaaaaggattcaaggaaatggacttgttatgtcatacttc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3015513 |
gcacatgctagttcttttgttagaagaggtactgaacaacttcatgaggcaagagagcatcaaaaggattcaaggaaatggacttgttatgtcatacttc |
3015612 |
T |
|
| Q |
108 |
ttgctatcgtcctcgtcatcgtgctcctgtttccattgttgatgtcaattctacctcacttgtttctgtagaattaaaaggtcaaagtcgtcatcatcat |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3015613 |
ttgctatcgtcctcgtcatcgtgctcctgtttccattgttgatgtcaattctacctcacttgtttctgtagaattaaaaggtcaaagtcgtcatcatcat |
3015712 |
T |
|
| Q |
208 |
catcgttattaaacaaagaatcttagagagtattagattttatgcattctgaaatgtcaaggaacatgctgcatgagctagcagcagaaaatgggaattt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3015713 |
catcgttattaaacaaagaatcttagagagtattagattttatgcattctgaaatgtcaaggaacatgctgcatgagctagcagcagaaaatgggaattt |
3015812 |
T |
|
| Q |
308 |
gtttgttggtgcctttttcttcaaggcatttcatgttgccatacatatattcaagtgaactattcatgcaggtaaacaaagaagtcacagaaccatgttt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3015813 |
gtttgttggtgcctttttcttcaaggcatttcatgttgccatacatatattcaagtgaactattcatgcaggtaaacaaagaagtcacagaaccatgttt |
3015912 |
T |
|
| Q |
408 |
ttctgattannnnnnnnnnnnnnggatctccatggaattgtaataatagtgagaacaagttcaaacatgacaacattgtaatagaaagttgacacaagat |
507 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3015913 |
ttctgattattttttttgtttttggatctccatggaattgtaataatagtgagaacaagttcaaacatgacaacattgtaatagaaagttgacacaagat |
3016012 |
T |
|
| Q |
508 |
ttctgtaatcttgatcag-nnnnnnncccccttcaattttctctttttattcctcaagcctgtttacttacaacggtagacgaatattgatatgtatgat |
606 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3016013 |
ttctgtaatcttgatcagctttttttcccccttcaattttctctttttattcctcaagcctgtttacttacaacggtagacgaatattgatatgtatgat |
3016112 |
T |
|
| Q |
607 |
cttaaaaatgataatctaactctaagacaatcataaaatgctgacaaatccatcatctatgataaacacggtatacttacgacacatttttaatgacacg |
706 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3016113 |
cttaaaaatgataatctaactctaagacaatcataaaatgctgacaaatccatcatctatgataaacacggtatacttacgacacatttttaatgacacg |
3016212 |
T |
|
| Q |
707 |
atgttgaataagtgtcaaagaatttgtatctataacatagttataaacaaaaaattatacaa |
768 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3016213 |
atgttgaataagtgtcaaagaatttgtatctataacatagttataaacaaaaaattatacaa |
3016274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 35955624 - 35955522
Alignment:
| Q |
8 |
gcacatgctagttcttttgttagaagaggtactgaacaacttcatgaggcaagagagcatcaaaaggattcaaggaaatggacttgttatgtcatacttc |
107 |
Q |
| |
|
|||||||| ||||||||||| |||||||| || ||||||||||| || || |||| ||| |||||| |||| ||||||||||| ||||||| |||| ||| |
|
|
| T |
35955624 |
gcacatgcaagttcttttgtaagaagagggacagaacaacttcaggaagctagagtgcaacaaaagaattctaggaaatggacatgttatgccataattc |
35955525 |
T |
|
| Q |
108 |
ttg |
110 |
Q |
| |
|
||| |
|
|
| T |
35955524 |
ttg |
35955522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 954 times since January 2019
Visitors: 1117