View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9482H-LTR4-TNT-insertion-11 (Length: 303)
Name: F9482H-LTR4-TNT-insertion-11
Description: F9482H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9482H-LTR4-TNT-insertion-11 |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 8 - 295
Target Start/End: Complemental strand, 51530453 - 51530166
Alignment:
| Q |
8 |
ccaagtaatgcaagaaactcgttgaagaatggcattgccatggcaataactgtggccattatcacaaatattgtcctccaaattagtctaaataagttga |
107 |
Q |
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| T |
51530453 |
ccaagtaatgcaagaaactcgttgaagaatggcattgccatggcaataactgtggccattatcacaaatattgtcctccaaattagtctaaataagttga |
51530354 |
T |
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| Q |
108 |
tgttgaacgttaaagaaccaattttgtttgggtattccttatgtatgaaagatgattgtggccacatcatgttagcacccatttcaactatacgaaatat |
207 |
Q |
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| T |
51530353 |
tgttgaatgttaaagaaccaattttgtttgggtattccttatgtatgaaagatgattgtggccacatcatgttagcacccatttcaactatacgaaatat |
51530254 |
T |
|
| Q |
208 |
tggttgagctaaaacctgcatcattataacaacatctctaatacgatctattttatcaactgattagataaaaataagggtataatta |
295 |
Q |
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| T |
51530253 |
tggttgagctaaaacctgcatcattataacaacatctctaatacgatctattttatcaactgattagataaaaataagggtataatta |
51530166 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 243913 - 243837
Alignment:
| Q |
29 |
ttgaagaatggcattgccatggcaataactgtggccattatcacaaatattgtcctccaaattagtctaaataagtt |
105 |
Q |
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| T |
243913 |
ttgaaaaatggcattgccatggcaagaactgttcctacaatcacaaatatcgtcctccaaattagcctaaacaagtt |
243837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 221284 - 221360
Alignment:
| Q |
29 |
ttgaagaatggcattgccatggcaataactgtggccattatcacaaatattgtcctccaaattagtctaaataagtt |
105 |
Q |
| |
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||||| ||||||||||||||||||| || || || | |||||||||||| ||||||||||||| ||||| ||||| |
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| T |
221284 |
ttgaaaaatggcattgccatggcaagaatggttgctagtatcacaaatatcgtcctccaaattaacctaaacaagtt |
221360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 12029522 - 12029598
Alignment:
| Q |
29 |
ttgaagaatggcattgccatggcaataactgtggccattatcacaaatattgtcctccaaattagtctaaataagtt |
105 |
Q |
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||||| ||||||||||||||||||| | ||| | | |||||||||||||||||||||||||| ||||| ||||| |
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| T |
12029522 |
ttgaaaaatggcattgccatggcaagagttgttcctagtatcacaaatattgtcctccaaattaacctaaacaagtt |
12029598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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