View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9482H-LTR4-TNT-insertion-12 (Length: 393)
Name: F9482H-LTR4-TNT-insertion-12
Description: F9482H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9482H-LTR4-TNT-insertion-12 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 9 - 383
Target Start/End: Complemental strand, 45974745 - 45974371
Alignment:
| Q |
9 |
ttgtttgacaacactcggagaaatgaaccaaatgatgccaacttttttatggagatcggcattannnnnnnnattaagttaggaaggaatagaaatttta |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
45974745 |
ttgtttgacaacactcggagaaatgaaccaaatgatgccaacttttttatggagatcggcattattttttttattaagttaggaaggaatagaaatttta |
45974646 |
T |
|
| Q |
109 |
ttttctgattaaaattatcaacaaattattacctaatattatatgttgaactttaagtcagtatatttttacatttatgattgtgttcttgtagagactg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45974645 |
ttttctgattaaaattatcaacaaattattacctaatattatatgttgaactttaagtcagtatatttttacatttatgattgtgttcttgtagagactg |
45974546 |
T |
|
| Q |
209 |
tgacaacctattagaacttcgaatgaagatgggaaaggttgataccaacatgacatgattgaagagacaggaaaaatgaaagcaaaaaggaatgacaaca |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45974545 |
tgacaacctattagaacttcgaatgaagatgggaaaggttgataccaacatgacatgattgaagagacaggaaaaatgaaagcaaaaaggaatgacaaca |
45974446 |
T |
|
| Q |
309 |
ataaaatggacatttctgctatatatgctgccaaaggtaaccaaaatatcattcattgttctgaaacatgaatta |
383 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45974445 |
ataaaatggacatttctgctatatatgctgccaaaggtaaccaaaatatcattcattgttctgaaacatgaatta |
45974371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 109 - 383
Target Start/End: Original strand, 45857200 - 45857470
Alignment:
| Q |
109 |
ttttctgattaaaattatcaacaaattattacctaatattatatgttgaactttaagtcagtatatttttacatttatgattgtgttcttgtagagactg |
208 |
Q |
| |
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|||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
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| T |
45857200 |
ttttctgattgaaattattaacaaattattagctaatattatatgttgaactttaagtcagtagatttttacatttatgattgtgttcctgtagagatca |
45857299 |
T |
|
| Q |
209 |
tgacaacctatt-agaacttcgaatgaagatgggaaaggttgataccaacatgacatgattgaagagacaggaaaaatgaaagcaaaaaggaatgacaac |
307 |
Q |
| |
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||| ||| | ||||||||||||||||||||||||| || | |||| ||||||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
45857300 |
tgataactgcctcagaacttcgaatgaagatgggaaagcttaacacca-----acatgattgaagagacaggaaaagtgaaagcaaaaaggattgacaac |
45857394 |
T |
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| Q |
308 |
aataaaatggacatttctgctatatatgctgccaaaggtaaccaaaatatcattcattgttctgaaacatgaatta |
383 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
45857395 |
aataaaatggacatttctgctatatatgctgccaaaggtaaccaaaatatcattcattgttctgcaacatgaatta |
45857470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 109 - 383
Target Start/End: Original strand, 45869754 - 45870023
Alignment:
| Q |
109 |
ttttctgattaaaattatcaacaaattattacctaatattatatgttgaactttaagtcagtatatttttacatttatgattgtgttcttgtagagactg |
208 |
Q |
| |
|
|||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| | |||||| |
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|
| T |
45869754 |
ttttctgattgaaattattaacaaattattagctaatattatatgttgaactttaagtcagtagatttttacaattatgattgtgttcct-tagagatca |
45869852 |
T |
|
| Q |
209 |
tgacaacctatt-agaacttcgaatgaagatgggaaaggttgataccaacatgacatgattgaagagacaggaaaaatgaaagcaaaaaggaatgacaac |
307 |
Q |
| |
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|||| ||| | ||||||||||||||||||||||||| || | |||| ||||||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
45869853 |
tgactaccgcctcagaacttcgaatgaagatgggaaagcttaacacca-----acatgattgaagagacaggaaaagtgaaagcaaaaaggattgacaac |
45869947 |
T |
|
| Q |
308 |
aataaaatggacatttctgctatatatgctgccaaaggtaaccaaaatatcattcattgttctgaaacatgaatta |
383 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
45869948 |
aataaaatggacatttctgctatatatgcttccaaaggtaaccaaaatatcattcattcttctgcaacatgaatta |
45870023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 246 - 383
Target Start/End: Complemental strand, 45965104 - 45964967
Alignment:
| Q |
246 |
gttgataccaacatgacatgattgaagagacaggaaaaatgaaagcaaaaaggaatgacaacaataaaatggacatttctgctatatatgctgccaaagg |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
45965104 |
gttgataccaacatgacatgattgaagagacaggaaaaatgaaagcaaaaaggaatgacaacaataaaatggacatttctgctatatatgcttccaaagg |
45965005 |
T |
|
| Q |
346 |
taaccaaaatatcattcattgttctgaaacatgaatta |
383 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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|
| T |
45965004 |
taaccaaaatatcattcattgttctgaaacatgaatta |
45964967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 109 - 370
Target Start/End: Complemental strand, 45981083 - 45980826
Alignment:
| Q |
109 |
ttttctgattaaaattatcaacaaattattacctaatattatatgttgaactttaagtcagtatatttttacatttatgattgtgttcttgtagagactg |
208 |
Q |
| |
|
|||||||||| ||||||| |||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| || ||||| | |
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| T |
45981083 |
ttttctgattgaaattattaacaaactattagctaatattatatgttgaactttaagtcagtagatttttacatttatggttgtgttcctgcagagatta |
45980984 |
T |
|
| Q |
209 |
tgacaacctatt-agaacttcgaatgaagatgggaaaggttgataccaacatgacatgattgaagagacaggaaaaatgaaagcaaaaaggaatgacaac |
307 |
Q |
| |
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|||||||| | |||||||| | | ||||| |||||| | |||| || ||| |||||||| ||| |||||||||||||||||||||| ||||||| |
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| T |
45980983 |
tgacaaccgcctcagaacttcaactcaagataggaaagcta---accacca--acaagattgaagggaccggaaaaatgaaagcaaaaaggattgacaac |
45980889 |
T |
|
| Q |
308 |
aataaaatggacatttctgctatatatgctgccaaaggtaaccaaaatatcattcattgttct |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||| |
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| T |
45980888 |
aataaaatggacatttctgctatatatgcttctaaaggtaaccaaaatattattcattgttct |
45980826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 106 - 251
Target Start/End: Complemental strand, 45970131 - 45969985
Alignment:
| Q |
106 |
ttattttctgattaaaattatcaacaaattattacctaatattatatgttgaactttaagtcagtatatttttacatttatgattgtgttcttgtagaga |
205 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||| |||| ||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||| |
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|
| T |
45970131 |
ttattttctgattaaaattaacaaaaaattattagctaacgttatatgttaaactttaagtcagtagatttttacatttatgattgtgttcctgtagaga |
45970032 |
T |
|
| Q |
206 |
ctgtgacaa-cctattagaacttcgaatgaagatgggaaaggttgat |
251 |
Q |
| |
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| |||||| || | |||||||||||||||||||||||||||||| |
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|
| T |
45970031 |
ttatgacaaccccctcggaacttcgaatgaagatgggaaaggttgat |
45969985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 45970208 - 45970155
Alignment:
| Q |
11 |
gtttgacaacactcggagaaatgaaccaaatgatgccaacttttttatggagat |
64 |
Q |
| |
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||||||||||||| ||||||||||||||||| |||||||| |||| ||||||| |
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|
| T |
45970208 |
gtttgacaacactgggagaaatgaaccaaataatgccaacattttcgtggagat |
45970155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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