View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9482H-LTR4-TNT-insertion-13 (Length: 663)
Name: F9482H-LTR4-TNT-insertion-13
Description: F9482H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9482H-LTR4-TNT-insertion-13 |
 | |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 646; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 646; E-Value: 0
Query Start/End: Original strand, 8 - 653
Target Start/End: Complemental strand, 28398230 - 28397585
Alignment:
| Q |
8 |
ctttgcaaatgtcaatgcctttcccaaaagcccggccttctgcgtaaactgctttaagggccatgctttgcttccaccagaccaaagagattttgcaaat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28398230 |
ctttgcaaatgtcaatgcctttcccaaaagcccggccttctgcgtaaactgctttaagggccatgctttgcttccaccagaccaaagagattttgcaaat |
28398131 |
T |
|
| Q |
108 |
acatagaaaaacacaagttcatatgcatccaagaactcaccagctttcccaagcaaatcagcctcacgaagaatatcacccatcgtcttagcaatgttca |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28398130 |
acatagaaaaacacaagttcatatgcatccaagaactcaccagctttcccaagcaaatcagcctcacgaagaatatcacccatcgtcttagcaatgttca |
28398031 |
T |
|
| Q |
208 |
cagcagcctccataaagttgcctgattcctcttctaattcaagaagctcatcaggtaagtttaatgattgtaagaacccgcgcttcaaatctatcgaatg |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28398030 |
cagcagcctccataaagttgcctgattcctcttctaattcaagaagctcatcaggtaagtttaatgattgtaagaacccgcgcttcaaatctatcgaatg |
28397931 |
T |
|
| Q |
308 |
aaaagctcgaacaaatttcatcatggatctgtaatcatttttgtcaaaataattgagggcacaattttccataaatttctgttcaattgcgtaaaggtca |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28397930 |
aaaagctcgaacaaatttcatcatggatctgtaatcatttttgtcaaaataattgagggcacaattttccataaatttctgttcaattgcgtaaaggtca |
28397831 |
T |
|
| Q |
408 |
tggctattagcccaaccagggtcagctctctcattttgtttccagcactgaatgtaatgtgatccagtgtcaagcaatccaccttttgcacaaacattca |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28397830 |
tggctattagcccaaccagggtcagctctctcattttgtttccagcactgaatgtaatgtgatccagtgtcaagcaatccaccttttgcacaaacattca |
28397731 |
T |
|
| Q |
508 |
aacaatctgagaagaaacttcctctagcataaacttgagctgccatgtgataacaacgagctaagaaaaagcaatcccctgcccttttcaaatcaggctc |
607 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28397730 |
aacaatctgagaagaaacttcctctagcataaacttgagctgccatgtgataacaacgagctaagaaaaagcaatcccctgcccttttcaaatcaggctc |
28397631 |
T |
|
| Q |
608 |
ttcacatttttccaggtaaatcttccctgttagcagaaaacgatta |
653 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28397630 |
ttcacatttttccaggtaaatcttccctgttagcagaaaacgatta |
28397585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0189 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 8 - 642
Target Start/End: Complemental strand, 23118 - 22490
Alignment:
| Q |
8 |
ctttgcaaatgtcaatgcctttcccaaaagcccggccttctgcgtaaactgctttaagggccatgctttgcttccaccagaccaaagagattttgcaaat |
107 |
Q |
| |
|
||||||||||| ||| || ||||||||||| |||||||||| ||||||||||| | |||||||||| |||||| | |||||||||| ||||| | | |
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| T |
23118 |
ctttgcaaatgccaacgctcttcccaaaagctcggccttctgtgtaaactgcttcatgggccatgctaagcttcccttataccaaagagaatttgcgagt |
23019 |
T |
|
| Q |
108 |
acatagaaaaacacaagttcatatgcatccaagaactcaccagctttcccaagcaaatcagcctcacgaagaatatcacccatcgtcttagcaatgttca |
207 |
Q |
| |
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|||||||||| ||||||||||||||| ||||||| |||||| |||| || |||| |||||||||||||||||||||||||||| ||||||||||||| | |
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|
| T |
23018 |
acatagaaaagcacaagttcatatgcttccaagagttcaccaacttttcctagcagatcagcctcacgaagaatatcacccatcatcttagcaatgttta |
22919 |
T |
|
| Q |
208 |
cagcagcctccataaagttgcctgattcctcttctaattcaagaagctcatcaggtaagtttaatgattgtaagaacccgcgcttcaaatctatcgaatg |
307 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| | ||| ||||||| |||||||| |
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| T |
22918 |
cagc---ctccataaagttgcctgattcctcttctaattcaagaagctcatcaagtaagcttaatgattgtaagaactcacgcctcaaatccatcgaatg |
22822 |
T |
|
| Q |
308 |
aaaagctcgaacaaatttcatcatggatctgtaatcatttttgtcaaaataattgagggcacaattttccataaatttctgttcaattgcgtaaaggtca |
407 |
Q |
| |
|
|||||||| ||||||||||||||| ||| || ||| || ||| ||||||| || ||||||| |||| || ||||||||||||||||||||| || ||| |
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|
| T |
22821 |
aaaagctctaacaaatttcatcatagatttgatatctttgttgccaaaatattttcgggcacatttttgcagaaatttctgttcaattgcgtacagatca |
22722 |
T |
|
| Q |
408 |
tggctattagcccaaccagggtcagctctctcattttgtttccagcactgaatgtaatgtgatccagtgtcaagcaatccaccttttgcacaaacattca |
507 |
Q |
| |
|
|| ||||||||||||||||| || | || ||||||||||||| || ||||||||||||| | ||| |||||| |||||||||||||||||||||||||| |
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|
| T |
22721 |
tgactattagcccaaccaggatccacactttcattttgtttccggcgctgaatgtaatgtaagccaatgtcaaacaatccaccttttgcacaaacattca |
22622 |
T |
|
| Q |
508 |
aacaatctgagaagaaacttcctctagcataaacttgagctgccatgtgataacaacgagctaagaaaaagcaatcccctgcccttttcaaatcaggctc |
607 |
Q |
| |
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|||||||| |||||||||||||||||||||| |||||||||||||| | | ||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
22621 |
aacaatctaagaagaaacttcctctagcatacacttgagctgccattttgtgacaaccagctaaataaaagcaatcccctgcccttttcaaatcaggc-- |
22524 |
T |
|
| Q |
608 |
ttcacatttttccaggtaaatcttccctgttagca |
642 |
Q |
| |
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||||||||||||| |||||||||||||||||||| |
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| T |
22523 |
-tcacatttttccaagtaaatcttccctgttagca |
22490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 216 - 653
Target Start/End: Original strand, 34602549 - 34602986
Alignment:
| Q |
216 |
tccataaagttgcctgattcctcttctaattcaagaagctcatcaggtaagtttaatgattgtaagaacccgcgcttcaaatctatcgaatgaaaagctc |
315 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||| ||||||||| |||||| |||| ||||| |||||||||| |
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| T |
34602549 |
tccataaagttgcctgattcctcttccaattcaagaagctcatcaagtaagcttaatgatagtaagaacctgcgctttaaattcatcgagtgaaaagctc |
34602648 |
T |
|
| Q |
316 |
gaacaaatttcatcatggatctgtaatcatttttgtcaaaataattgagggcacaattttccataaatttctgttcaattgcgtaaaggtcatggctatt |
415 |
Q |
| |
|
|||||||||||||||||||| || ||| || || |||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
34602649 |
gaacaaatttcatcatggatttgatatctttcttctcaaaataattgtgggcacaattttccataaatttctgttcaattgcgttcagatcatggctatt |
34602748 |
T |
|
| Q |
416 |
agcccaaccagggtcagctctctcattttgtttccagcactgaatgtaatgtgatccagtgtcaagcaatccaccttttgcacaaacattcaaacaatct |
515 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
34602749 |
agcccaaccagggtcagcactctcattttgtttccagcactcaatgtaatgtaatccaatgtcaaacaatccaccttttgcacaaacattcaaacaatct |
34602848 |
T |
|
| Q |
516 |
gagaagaaacttcctctagcataaacttgagctgccatgtgataacaacgagctaagaaaaagcaatcccctgcccttttcaaatcaggctcttcacatt |
615 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||| | | |||||| |||||| |||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
34602849 |
gagaagaaacttcctctagcatacacttgagcagccatttcgtgacaacgtgctaagtaaaagcaatcccttgcccttttcaaatcaggctcttcacatt |
34602948 |
T |
|
| Q |
616 |
tttccaggtaaatcttccctgttagcagaaaacgatta |
653 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
34602949 |
tttccaagtaaagtttccctgttagcagaaaacgatta |
34602986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 8 - 131
Target Start/End: Original strand, 34602422 - 34602545
Alignment:
| Q |
8 |
ctttgcaaatgtcaatgcctttcccaaaagcccggccttctgcgtaaactgctttaagggccatgctttgcttccaccagaccaaagagattttgcaaat |
107 |
Q |
| |
|
||||||||||||||| || ||||||||| | |||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||| | |
|
|
| T |
34602422 |
ctttgcaaatgtcaacgctcgtcccaaaagatcttccttctctgtaaactgcttgaagggccatgctttgcttcctccagaccaaagagattttgcaagt |
34602521 |
T |
|
| Q |
108 |
acatagaaaaacacaagttcatat |
131 |
Q |
| |
|
||||||||||||| ||||||||| |
|
|
| T |
34602522 |
acatagaaaaacattagttcatat |
34602545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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