View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9482H-LTR4-TNT-insertion-16 (Length: 350)

Name: F9482H-LTR4-TNT-insertion-16
Description: F9482H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9482H-LTR4-TNT-insertion-16
F9482H-LTR4-TNT-insertion-16
[»] chr8 (2 HSPs)
chr8 (8-340)||(13245283-13245615)
chr8 (8-55)||(43325486-43325533)
[»] chr1 (3 HSPs)
chr1 (8-55)||(34918420-34918467)
chr1 (8-55)||(17150919-17150966)
chr1 (8-56)||(14591539-14591587)
[»] chr7 (2 HSPs)
chr7 (8-55)||(33989762-33989809)
chr7 (8-55)||(49024183-49024230)
[»] chr5 (2 HSPs)
chr5 (8-55)||(7529706-7529753)
chr5 (7-56)||(10830328-10830377)
[»] chr2 (2 HSPs)
chr2 (8-55)||(725137-725184)
chr2 (8-55)||(38376491-38376538)
[»] scaffold0031 (1 HSPs)
scaffold0031 (10-54)||(1522-1566)


Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 8 - 340
Target Start/End: Original strand, 13245283 - 13245615
Alignment:
Q  8 agaaataggtaagaaagagtttgataagagataaaaaggtgagaaataacttatatttgacacctagataattttttaggtgaatggcaacattataagg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13245283 agaaataggtaagaaagagtttgataagagataaaaaggtgagaaataacttatatttgacacctagataattttttaggtgaatggcaacattataagg 13245382  T
Q  108 tgttatcattcaccgaaaaaattatctaggtgtcagcccttacaataactcatgttcgtctttctttgttagatgaaaatcattaaaacagaaacaagat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13245383 tgttatcattcaccgaaaaaattatctaggtgtcagcccttacaataactcatgttcgtctttctttgttagatgaaaatcattaaaacagaaacaagat 13245482  T
Q  208 actaaaatcatttgattacatcaactatcatatacaatcccaagaaaatagcggactttagaaagttatgtcgaaaacaaattcgagattttagtaataa 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13245483 actaaaatcatttgattacatcaactatcatatacaatcccaagaaaatagcggactttagaaagttatgtcgaaaacaaattcgagattttagtaataa 13245582  T
Q  308 tactttacacattttggaatcaattacgaatta 340  Q
    |||||||||||||||||||||||||||||||||    
T  13245583 tactttacacattttggaatcaattacgaatta 13245615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 43325486 - 43325533
Alignment:
Q  8 agaaataggtaagaaagagtttgataagagataaaaaggtgagaaata 55  Q
    |||| ||||||||| ||||||||| |||||| ||||||||||||||||    
T  43325486 agaagtaggtaagagagagtttgagaagagagaaaaaggtgagaaata 43325533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 34918467 - 34918420
Alignment:
Q  8 agaaataggtaagaaagagtttgataagagataaaaaggtgagaaata 55  Q
    |||||||||||||| ||||||||| ||||||||||||||||| |||||    
T  34918467 agaaataggtaagagagagtttgagaagagataaaaaggtgaaaaata 34918420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 17150919 - 17150966
Alignment:
Q  8 agaaataggtaagaaagagtttgataagagataaaaaggtgagaaata 55  Q
    |||||||||||||| ||||| ||| |||||| ||||||||||||||||    
T  17150919 agaaataggtaagagagagtatgagaagagagaaaaaggtgagaaata 17150966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 14591587 - 14591539
Alignment:
Q  8 agaaataggtaagaaagagtttgataagagataaaaaggtgagaaataa 56  Q
    |||||||||||||| ||||||||| |||||| |||||  ||||||||||    
T  14591587 agaaataggtaagagagagtttgaaaagagagaaaaatatgagaaataa 14591539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 33989809 - 33989762
Alignment:
Q  8 agaaataggtaagaaagagtttgataagagataaaaaggtgagaaata 55  Q
    |||||||||||||| ||||||||| |||||| |||||||| |||||||    
T  33989809 agaaataggtaagagagagtttgagaagagagaaaaaggtaagaaata 33989762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 49024183 - 49024230
Alignment:
Q  8 agaaataggtaagaaagagtttgataagagataaaaaggtgagaaata 55  Q
    |||||||||||||| ||||||||| |||||| ||||| ||||||||||    
T  49024183 agaaataggtaagagagagtttgaaaagagagaaaaatgtgagaaata 49024230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 7529706 - 7529753
Alignment:
Q  8 agaaataggtaagaaagagtttgataagagataaaaaggtgagaaata 55  Q
    ||||||||||||||||||||||||||||||| |||  | |||||||||    
T  7529706 agaaataggtaagaaagagtttgataagagagaaagggatgagaaata 7529753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 10830377 - 10830328
Alignment:
Q  7 aagaaataggtaagaaagagtttgataagagataaaaaggtgagaaataa 56  Q
    ||||||||||||||| ||||||||| |||||| ||| | |||||||||||    
T  10830377 aagaaataggtaagagagagtttgagaagagagaaatatgtgagaaataa 10830328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 725184 - 725137
Alignment:
Q  8 agaaataggtaagaaagagtttgataagagataaaaaggtgagaaata 55  Q
    |||||||||||||| ||||||||| |||||| |||||||| |||||||    
T  725184 agaaataggtaagagagagtttgagaagagagaaaaaggtaagaaata 725137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 38376538 - 38376491
Alignment:
Q  8 agaaataggtaagaaagagtttgataagagataaaaaggtgagaaata 55  Q
    |||||||||||||| ||||||||| |||||| ||| ||||||||||||    
T  38376538 agaaataggtaagagagagtttgaaaagagagaaagaggtgagaaata 38376491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 1522 - 1566
Alignment:
Q  10 aaataggtaagaaagagtttgataagagataaaaaggtgagaaat 54  Q
    |||||||||||| ||||| ||| |||||| |||||||||||||||    
T  1522 aaataggtaagagagagtatgagaagagagaaaaaggtgagaaat 1566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 935 times since January 2019
Visitors: 1117