View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9482H-LTR4-TNT-insertion-18 (Length: 92)
Name: F9482H-LTR4-TNT-insertion-18
Description: F9482H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9482H-LTR4-TNT-insertion-18 |
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Alignment Details
Target: chr8 (Bit Score: 77; Significance: 2e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 2e-36
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 41697926 - 41697850
Alignment:
| Q |
8 |
acaatgaggatgcaaatgttgttcttgttggtcacacgtaagcgtttgtattcatattcatattttgttctcgaatt |
84 |
Q |
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| T |
41697926 |
acaatgaggatgcaaatgttgttcttgttggtcacacgtaagcgtttgtattcatattcatattttgttctcgaatt |
41697850 |
T |
|
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