View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9482H-LTR4-TNT-insertion-19 (Length: 488)

Name: F9482H-LTR4-TNT-insertion-19
Description: F9482H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9482H-LTR4-TNT-insertion-19
F9482H-LTR4-TNT-insertion-19
[»] chr6 (35 HSPs)
chr6 (8-288)||(27615219-27615499)
chr6 (40-287)||(27595545-27595792)
chr6 (40-287)||(27693417-27693660)
chr6 (154-287)||(27727165-27727300)
chr6 (46-94)||(30523697-30523745)
chr6 (124-179)||(5550085-5550140)
chr6 (40-86)||(20368158-20368204)
chr6 (132-166)||(27713473-27713507)
chr6 (134-179)||(10749300-10749345)
chr6 (124-176)||(281910-281962)
chr6 (49-85)||(740873-740909)
chr6 (46-98)||(2455844-2455896)
chr6 (50-98)||(9667973-9668021)
chr6 (125-165)||(22742333-22742373)
chr6 (128-180)||(29940748-29940800)
chr6 (46-85)||(8010404-8010443)
chr6 (194-250)||(14340936-14340994)
chr6 (132-179)||(29274299-29274346)
chr6 (41-83)||(1575944-1575986)
chr6 (132-178)||(3204612-3204658)
chr6 (132-166)||(7713991-7714025)
chr6 (132-166)||(7785812-7785846)
chr6 (189-248)||(24774577-24774638)
chr6 (45-78)||(5730731-5730764)
chr6 (41-86)||(31624136-31624181)
chr6 (46-83)||(32917246-32917283)
chr6 (46-86)||(769184-769224)
chr6 (132-164)||(2732309-2732341)
chr6 (134-166)||(3217262-3217294)
chr6 (127-179)||(4006667-4006719)
chr6 (46-98)||(4420677-4420729)
chr6 (50-86)||(7148712-7148748)
chr6 (135-179)||(24836272-24836316)
chr6 (125-169)||(25426133-25426177)
chr6 (135-175)||(28660833-28660873)
[»] chr5 (43 HSPs)
chr5 (313-473)||(29854594-29854754)
chr5 (313-473)||(29873457-29873617)
chr5 (313-473)||(30675951-30676111)
chr5 (313-473)||(30337188-30337348)
chr5 (313-473)||(30484684-30484844)
chr5 (315-473)||(30401360-30401518)
chr5 (313-473)||(30061655-30061815)
chr5 (313-473)||(30750929-30751089)
chr5 (313-473)||(30712091-30712251)
chr5 (319-473)||(17417337-17417491)
chr5 (313-473)||(30207805-30207965)
chr5 (313-422)||(30241056-30241165)
chr5 (313-453)||(30329504-30329644)
chr5 (316-393)||(30437161-30437238)
chr5 (313-470)||(30476661-30476818)
chr5 (124-179)||(14295459-14295514)
chr5 (40-85)||(11700356-11700401)
chr5 (127-179)||(35135727-35135779)
chr5 (46-98)||(37611199-37611251)
chr5 (46-98)||(37787929-37787981)
chr5 (323-473)||(17984170-17984323)
chr5 (46-85)||(32172700-32172739)
chr5 (132-179)||(32969187-32969234)
chr5 (135-248)||(39257460-39257575)
chr5 (313-383)||(30520288-30520358)
chr5 (313-383)||(30560628-30560698)
chr5 (124-166)||(32059651-32059693)
chr5 (40-84)||(7853688-7853733)
chr5 (134-171)||(10363125-10363162)
chr5 (132-189)||(29117000-29117056)
chr5 (134-179)||(37063146-37063191)
chr5 (46-83)||(37794682-37794719)
chr5 (139-179)||(6738484-6738524)
chr5 (41-85)||(7674695-7674739)
chr5 (139-179)||(10303754-10303794)
chr5 (46-78)||(11457152-11457184)
chr5 (135-179)||(12595813-12595857)
chr5 (124-164)||(12975315-12975355)
chr5 (135-179)||(28586839-28586883)
chr5 (46-78)||(38047863-38047895)
chr5 (40-83)||(39105513-39105557)
chr5 (46-78)||(40499710-40499742)
chr5 (46-98)||(41052902-41052954)
[»] chr8 (21 HSPs)
chr8 (43-287)||(29262855-29263095)
chr8 (124-179)||(1470918-1470973)
chr8 (124-179)||(4558751-4558806)
chr8 (46-83)||(30987975-30988012)
chr8 (123-163)||(7878547-7878587)
chr8 (135-208)||(11494076-11494150)
chr8 (46-86)||(31875579-31875619)
chr8 (46-86)||(43368684-43368724)
chr8 (124-179)||(12361145-12361200)
chr8 (40-83)||(39551187-39551230)
chr8 (125-179)||(28784858-28784912)
chr8 (40-98)||(37740405-37740462)
chr8 (124-166)||(38874612-38874654)
chr8 (40-77)||(926530-926567)
chr8 (130-179)||(25867039-25867088)
chr8 (117-166)||(35374428-35374477)
chr8 (46-75)||(40071806-40071835)
chr8 (40-76)||(4390269-4390305)
chr8 (46-98)||(9835884-9835936)
chr8 (135-179)||(27728094-27728138)
chr8 (132-180)||(42237492-42237540)
[»] chr3 (29 HSPs)
chr3 (313-473)||(25292610-25292770)
chr3 (132-179)||(1395624-1395671)
chr3 (136-179)||(26990687-26990730)
chr3 (41-98)||(42745072-42745129)
chr3 (137-181)||(25195375-25195419)
chr3 (46-98)||(37273168-37273220)
chr3 (51-86)||(3044248-3044283)
chr3 (132-179)||(24887353-24887400)
chr3 (40-95)||(29427623-29427678)
chr3 (132-179)||(32703091-32703138)
chr3 (132-179)||(49586986-49587033)
chr3 (46-85)||(50004699-50004738)
chr3 (52-98)||(38318994-38319040)
chr3 (127-189)||(48397590-48397651)
chr3 (45-86)||(2152161-2152202)
chr3 (134-179)||(10101548-10101593)
chr3 (134-179)||(10212473-10212518)
chr3 (136-251)||(38462159-38462277)
chr3 (130-179)||(42808932-42808981)
chr3 (130-179)||(42809254-42809303)
chr3 (52-85)||(52619050-52619083)
chr3 (46-86)||(5391925-5391965)
chr3 (46-94)||(10073200-10073248)
chr3 (135-179)||(15304420-15304464)
chr3 (46-98)||(20192590-20192642)
chr3 (46-78)||(21574544-21574576)
chr3 (127-179)||(42530187-42530239)
chr3 (41-85)||(45541618-45541662)
chr3 (46-98)||(49465920-49465972)
[»] chr4 (28 HSPs)
chr4 (313-473)||(20295245-20295405)
chr4 (313-470)||(52353247-52353404)
chr4 (134-179)||(31038939-31038984)
chr4 (127-179)||(4071835-4071887)
chr4 (52-98)||(6466036-6466082)
chr4 (46-98)||(6987725-6987777)
chr4 (46-98)||(27725248-27725300)
chr4 (127-179)||(49219092-49219144)
chr4 (124-180)||(53626728-53626784)
chr4 (41-84)||(2874603-2874646)
chr4 (132-179)||(8130127-8130174)
chr4 (127-166)||(13949909-13949948)
chr4 (132-179)||(30024653-30024700)
chr4 (46-96)||(1965977-1966027)
chr4 (125-163)||(21952930-21952968)
chr4 (40-98)||(22662225-22662283)
chr4 (40-98)||(22666704-22666762)
chr4 (200-251)||(50298408-50298461)
chr4 (125-179)||(54325100-54325154)
chr4 (126-179)||(6364102-6364155)
chr4 (130-163)||(22684584-22684617)
chr4 (130-175)||(41701509-41701554)
chr4 (46-86)||(2996619-2996659)
chr4 (135-187)||(11917505-11917556)
chr4 (46-98)||(20936213-20936265)
chr4 (46-86)||(41097240-41097280)
chr4 (40-76)||(46401320-46401356)
chr4 (132-164)||(55437356-55437388)
[»] scaffold0349 (2 HSPs)
scaffold0349 (154-287)||(5744-5879)
scaffold0349 (132-166)||(18437-18471)
[»] chr7 (34 HSPs)
chr7 (315-393)||(26708680-26708758)
chr7 (130-179)||(27121654-27121703)
chr7 (140-247)||(22387979-22388092)
chr7 (122-179)||(12834997-12835054)
chr7 (134-179)||(39591539-39591584)
chr7 (133-178)||(46825052-46825097)
chr7 (46-86)||(29290379-29290419)
chr7 (40-76)||(36537964-36538000)
chr7 (46-85)||(36598340-36598379)
chr7 (124-179)||(40689048-40689103)
chr7 (132-179)||(48157190-48157237)
chr7 (133-175)||(1417221-1417263)
chr7 (41-83)||(15740390-15740432)
chr7 (132-166)||(23918923-23918957)
chr7 (40-98)||(28520990-28521048)
chr7 (124-166)||(31002727-31002769)
chr7 (125-179)||(35536060-35536114)
chr7 (52-85)||(11048074-11048107)
chr7 (40-85)||(19719053-19719098)
chr7 (124-189)||(28340906-28340970)
chr7 (134-179)||(30456522-30456567)
chr7 (132-165)||(47046178-47046211)
chr7 (135-175)||(3501039-3501079)
chr7 (135-179)||(3802212-3802256)
chr7 (125-189)||(7623082-7623145)
chr7 (45-85)||(9423577-9423617)
chr7 (122-166)||(30134015-30134059)
chr7 (45-85)||(39539764-39539804)
chr7 (131-179)||(43318597-43318645)
chr7 (46-98)||(44615088-44615140)
chr7 (46-86)||(44686976-44687016)
chr7 (40-96)||(45078314-45078370)
chr7 (49-85)||(48496864-48496900)
chr7 (127-179)||(49060493-49060545)
[»] scaffold0024 (1 HSPs)
scaffold0024 (135-248)||(27457-27573)
[»] chr1 (35 HSPs)
chr1 (323-390)||(7100772-7100839)
chr1 (334-389)||(7580412-7580467)
chr1 (53-96)||(6262056-6262099)
chr1 (124-179)||(49517023-49517078)
chr1 (52-86)||(23445380-23445414)
chr1 (132-182)||(27738250-27738300)
chr1 (132-210)||(4200150-4200229)
chr1 (40-77)||(15942725-15942762)
chr1 (138-179)||(45234150-45234191)
chr1 (127-179)||(7218139-7218191)
chr1 (127-179)||(15360847-15360899)
chr1 (46-98)||(35925724-35925776)
chr1 (41-85)||(43338163-43338207)
chr1 (48-83)||(6976973-6977008)
chr1 (46-85)||(15438010-15438049)
chr1 (46-85)||(17628646-17628685)
chr1 (132-175)||(28467377-28467420)
chr1 (132-179)||(43372029-43372076)
chr1 (132-179)||(44032069-44032116)
chr1 (124-166)||(15361679-15361721)
chr1 (40-98)||(15515575-15515633)
chr1 (46-80)||(17631086-17631120)
chr1 (40-78)||(19412575-19412613)
chr1 (130-179)||(1879095-1879144)
chr1 (52-85)||(3070080-3070113)
chr1 (46-83)||(4699599-4699636)
chr1 (124-189)||(7274001-7274065)
chr1 (138-179)||(14737781-14737822)
chr1 (40-97)||(37811887-37811944)
chr1 (124-164)||(9656618-9656658)
chr1 (135-179)||(17628552-17628596)
chr1 (127-163)||(25006099-25006135)
chr1 (127-175)||(30371105-30371153)
chr1 (46-82)||(30418166-30418202)
chr1 (139-179)||(40357963-40358003)
[»] chr2 (26 HSPs)
chr2 (46-83)||(4550796-4550833)
chr2 (46-98)||(1742016-1742068)
chr2 (40-85)||(43529836-43529881)
chr2 (45-85)||(2226983-2227023)
chr2 (126-178)||(33256694-33256746)
chr2 (46-98)||(34652020-34652072)
chr2 (132-179)||(1493583-1493630)
chr2 (127-166)||(11513864-11513903)
chr2 (132-179)||(17952771-17952818)
chr2 (132-179)||(43173176-43173222)
chr2 (40-99)||(43530089-43530148)
chr2 (117-179)||(656832-656894)
chr2 (130-184)||(3458606-3458659)
chr2 (40-98)||(41042000-41042058)
chr2 (53-98)||(1939323-1939368)
chr2 (46-107)||(10285885-10285946)
chr2 (41-74)||(14666606-14666639)
chr2 (46-83)||(15120232-15120269)
chr2 (47-88)||(15377810-15377851)
chr2 (40-85)||(33503054-33503099)
chr2 (46-86)||(11344754-11344794)
chr2 (127-179)||(25609749-25609801)
chr2 (42-98)||(28039312-28039368)
chr2 (127-179)||(31740024-31740076)
chr2 (45-85)||(32821856-32821896)
chr2 (132-164)||(33944573-33944605)
[»] scaffold0085 (1 HSPs)
scaffold0085 (137-175)||(34072-34110)
[»] scaffold0015 (1 HSPs)
scaffold0015 (124-164)||(69005-69045)


Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 35)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 8 - 288
Target Start/End: Original strand, 27615219 - 27615499
Alignment:
Q  8 tgaacatacaatgataagtgtcttgtgagactgagaatttatggaaacaacttatgacatgttcataagctattttcaagtaatttccatagattctcta 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  27615219 tgaacatacaatgataagtgtcttgtgagactgagaatttatggaaacaacttatgacatgttcataagctattttcaagtaatttccataaattctcta 27615318  T
Q  108 gatttgcaaatgatatcagcttacagcttatatgaaaagaatttgactttattttatctattattatagaaaataacatataaaagcacttacatgataa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27615319 gatttgcaaatgatatcagcttacagcttatatgaaaagaatttgactttattttatctattattatagaaaataacatataaaagcacttacatgataa 27615418  T
Q  208 gtgtctatgatataagcttaattaatttgtttatccaaacatggaaaatacaagcgaacgaaaatagtcaattttagaaag 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27615419 gtgtctatgatataagcttaattaatttgtttatccaaacatggaaaatacaagcgaacgaaaatagtcaattttagaaag 27615499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 40 - 287
Target Start/End: Original strand, 27595545 - 27595792
Alignment:
Q  40 gagaatttatggaaacaacttatgacatgttcataagctattttcaagtaatttccatagattctctagatttgcaaatgatatcagcttacagcttata 139  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||  |||||||||| || | |||||||||||||    
T  27595545 gagaatttatggaaacaacttatgacatgttcataagctattttcaagtaatttccgtaaactctctaggattgcaaatgaaattaacttacagcttata 27595644  T
Q  140 tgaaaagaatttgactttattttatctattattatagaaaataacatataaaagcacttacatgataagtgtctatgatataagcttaattaatttgttt 239  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||  ||||||||||  |  |||||||||||| ||||||    
T  27595645 tgaaaataatttgactttattttatcttttattatagaaaataacatatataagcacttacatgggaagtgtctatactgcaagcttaattaagttgttt 27595744  T
Q  240 atccaaacatggaaaatacaagcgaacgaaaatagtcaattttagaaa 287  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||    
T  27595745 atccaaacatggcaattacaagcgaacgaaaatagtcaattttagaaa 27595792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 40 - 287
Target Start/End: Original strand, 27693417 - 27693660
Alignment:
Q  40 gagaatttatggaaacaacttatgacatgttcataagctattttcaagtaatttccatagattctctagatttgcaaatgatatcagcttacagcttata 139  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||  |||||||||| ||||||||||||||||||    
T  27693417 gagaatttatggaaacaacttatgacatgttcataagctattttcaagtaatttccgtaaactctctaggattgcaaatgaaatcagcttacagcttata 27693516  T
Q  140 tgaaaagaatttgactttattttatctattattatagaaaataacatataaaagcacttacatgataagtgtctatgatataagcttaattaatttgttt 239  Q
    |||||| ||||||||||||||||||||  ||||||||||||||||||||| || |||||| |||| ||||||||||| | ||||||||||||| ||||||    
T  27693517 tgaaaataatttgactttattttatcttctattatagaaaataacatatataaacacttatatgagaagtgtctatgttgtaagcttaattaagttgttt 27693616  T
Q  240 atccaaacatggaaaatacaagcgaacgaaaatagtcaattttagaaa 287  Q
    |||||||||||    ||||||||||| ||||||| |||||||||||||    
T  27693617 atccaaacatg----atacaagcgaatgaaaataatcaattttagaaa 27693660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 154 - 287
Target Start/End: Original strand, 27727165 - 27727300
Alignment:
Q  154 ctttattttatctattattatagaaaataacat--ataaaagcacttacatgataagtgtctatgatataagcttaattaatttgtttatccaaacatgg 251  Q
    ||||||||||||| | ||||||||||||||| |  ||| ||||||||| ||||||||||| |||  |||||||||||||||  | || ||| ||||||||    
T  27727165 ctttattttatctttaattatagaaaataacttgtatataagcacttatatgataagtgtttatactataagcttaattaagctattaatctaaacatgg 27727264  T
Q  252 aaaatacaagcgaacgaaaatagtcaattttagaaa 287  Q
      |||| |  |||||||||||||||||||| |||||    
T  27727265 gcaatatacacgaacgaaaatagtcaatttcagaaa 27727300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 30523745 - 30523697
Alignment:
Q  46 ttatggaaacaacttatgacatgttcataagctattttcaagtaatttc 94  Q
    |||||||||||||||||| |||||||||||||| ||||||| |||||||    
T  30523745 ttatggaaacaacttatgccatgttcataagctgttttcaactaatttc 30523697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 124 - 179
Target Start/End: Complemental strand, 5550140 - 5550085
Alignment:
Q  124 cagcttacagcttatatgaaaagaatttgactttattttatctattattatagaaa 179  Q
    ||||||| |||||||||||||| ||||||||||||| |||||| ||||||| ||||    
T  5550140 cagcttatagcttatatgaaaacaatttgactttatgttatctcttattatcgaaa 5550085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 20368158 - 20368204
Alignment:
Q  40 gagaatttatggaaacaacttatgacatgttcataagctattttcaa 86  Q
    ||||| ||||| |||||||||||||||||||||||||||| ||||||    
T  20368158 gagaacttatgaaaacaacttatgacatgttcataagctagtttcaa 20368204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 166
Target Start/End: Complemental strand, 27713507 - 27713473
Alignment:
Q  132 agcttatatgaaaagaatttgactttattttatct 166  Q
    |||||||||||||||||||||||||||||||||||    
T  27713507 agcttatatgaaaagaatttgactttattttatct 27713473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 134 - 179
Target Start/End: Original strand, 10749300 - 10749345
Alignment:
Q  134 cttatatgaaaagaatttgactttattttatctattattatagaaa 179  Q
    |||||||||||| ||||| |||||||||||||| ||||||||||||    
T  10749300 cttatatgaaaataatttaactttattttatcttttattatagaaa 10749345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 124 - 176
Target Start/End: Original strand, 281910 - 281962
Alignment:
Q  124 cagcttacagcttatatgaaaagaatttgactttattttatctattattatag 176  Q
    ||||||| |||||||||||||| || ||||||||||||||||| || ||||||    
T  281910 cagcttatagcttatatgaaaacaagttgactttattttatcttttgttatag 281962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 740873 - 740909
Alignment:
Q  49 tggaaacaacttatgacatgttcataagctattttca 85  Q
    |||||||||||||||||||||||||||| ||||||||    
T  740873 tggaaacaacttatgacatgttcataagttattttca 740909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 2455896 - 2455844
Alignment:
Q  46 ttatggaaacaacttatgacatgttcataagctattttcaagtaatttccata 98  Q
    |||||||||||||||||||||||  ||||| |||||||||| | |||||||||    
T  2455896 ttatggaaacaacttatgacatgcccataaactattttcaacttatttccata 2455844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 9667973 - 9668021
Alignment:
Q  50 ggaaacaacttatgacatgttcataagctattttcaagtaatttccata 98  Q
    |||||||||||||||||||| |||||||| ||||||| | |||||||||    
T  9667973 ggaaacaacttatgacatgtccataagctgttttcaacttatttccata 9668021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 165
Target Start/End: Complemental strand, 22742373 - 22742333
Alignment:
Q  125 agcttacagcttatatgaaaagaatttgactttattttatc 165  Q
    |||||| |||||||||||||| |||||||||||||||||||    
T  22742373 agcttatagcttatatgaaaacaatttgactttattttatc 22742333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 128 - 180
Target Start/End: Complemental strand, 29940800 - 29940748
Alignment:
Q  128 ttacagcttatatgaaaagaatttgactttattttatctattattatagaaaa 180  Q
    |||||||||| ||||||| || ||||||||||||||||| || ||||||||||    
T  29940800 ttacagcttaaatgaaaacaaattgactttattttatcttttgttatagaaaa 29940748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 85
Target Start/End: Complemental strand, 8010443 - 8010404
Alignment:
Q  46 ttatggaaacaacttatgacatgttcataagctattttca 85  Q
    |||| ||||||||| |||||||||||||||||||||||||    
T  8010443 ttatagaaacaactcatgacatgttcataagctattttca 8010404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 14340936 - 14340994
Alignment:
Q  194 cacttacatgataagtgtctatgatataagc--ttaattaatttgtttatccaaacatg 250  Q
    |||||| ||||||||||| |||| |||||||  |||||||| |||||||||||||||||    
T  14340936 cacttatatgataagtgtttatgttataagcacttaattaagttgtttatccaaacatg 14340994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 179
Target Start/End: Original strand, 29274299 - 29274346
Alignment:
Q  132 agcttatatgaaaagaatttgactttattttatctattattatagaaa 179  Q
    |||||||||||||| |||||||||||||||||||| ||  ||||||||    
T  29274299 agcttatatgaaaacaatttgactttattttatcttttgctatagaaa 29274346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 83
Target Start/End: Complemental strand, 1575986 - 1575944
Alignment:
Q  41 agaatttatggaaacaacttatgacatgttcataagctatttt 83  Q
    |||| ||||| ||||||||||||||||||||||||||| ||||    
T  1575986 agaacttatgaaaacaacttatgacatgttcataagctgtttt 1575944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 3204612 - 3204658
Alignment:
Q  132 agcttatatgaaaagaatttgactttattttatctattattatagaa 178  Q
    |||||||||||||| | || ||||||||||||||| |||||||||||    
T  3204612 agcttatatgaaaacagttcgactttattttatcttttattatagaa 3204658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 166
Target Start/End: Complemental strand, 7714025 - 7713991
Alignment:
Q  132 agcttatatgaaaagaatttgactttattttatct 166  Q
    |||||||||||||| ||||||||||||||||||||    
T  7714025 agcttatatgaaaacaatttgactttattttatct 7713991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 166
Target Start/End: Original strand, 7785812 - 7785846
Alignment:
Q  132 agcttatatgaaaagaatttgactttattttatct 166  Q
    |||||||||||||||| ||||||||||||||||||    
T  7785812 agcttatatgaaaagagtttgactttattttatct 7785846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 248
Target Start/End: Complemental strand, 24774638 - 24774577
Alignment:
Q  189 aaaagcacttacatgataagtgtctatgatataagc--ttaattaatttgtttatccaaaca 248  Q
    |||| |||||||||||||||||| ||||  ||||||  ||||||||| ||||||||||||||    
T  24774638 aaaaacacttacatgataagtgtgtatgtgataagcgcttaattaatctgtttatccaaaca 24774577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 78
Target Start/End: Complemental strand, 5730764 - 5730731
Alignment:
Q  45 tttatggaaacaacttatgacatgttcataagct 78  Q
    |||||||||||||||||||||||||||| |||||    
T  5730764 tttatggaaacaacttatgacatgttcacaagct 5730731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 31624181 - 31624136
Alignment:
Q  41 agaatttatggaaacaacttatgacatgttcataagctattttcaa 86  Q
    |||| ||||| ||||| ||||||||||||||||||||| |||||||    
T  31624181 agaacttatgaaaacagcttatgacatgttcataagctgttttcaa 31624136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 83
Target Start/End: Complemental strand, 32917283 - 32917246
Alignment:
Q  46 ttatggaaacaacttatgacatgttcataagctatttt 83  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  32917283 ttatggaaacaacttatgacatgtccataagctttttt 32917246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 769224 - 769184
Alignment:
Q  46 ttatggaaacaacttatgacatgttcataagctattttcaa 86  Q
    ||||| ||||| ||||||||||||||||||||| |||||||    
T  769224 ttatgaaaacatcttatgacatgttcataagctgttttcaa 769184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 132 - 164
Target Start/End: Original strand, 2732309 - 2732341
Alignment:
Q  132 agcttatatgaaaagaatttgactttattttat 164  Q
    |||||||||||||| ||||||||||||||||||    
T  2732309 agcttatatgaaaataatttgactttattttat 2732341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 134 - 166
Target Start/End: Original strand, 3217262 - 3217294
Alignment:
Q  134 cttatatgaaaagaatttgactttattttatct 166  Q
    |||||||||||| ||||||||||||||||||||    
T  3217262 cttatatgaaaataatttgactttattttatct 3217294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 4006719 - 4006667
Alignment:
Q  127 cttacagcttatatgaaaagaatttgactttattttatctattattatagaaa 179  Q
    |||| ||||||||| |||| |||||||||||||||||||  || |||||||||    
T  4006719 cttatagcttatataaaaacaatttgactttattttatcatttgttatagaaa 4006667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 4420729 - 4420677
Alignment:
Q  46 ttatggaaacaacttatgacatgttcataagctattttcaagtaatttccata 98  Q
    |||| ||||||| |||||||||||||||||||| ||||||  | |||||||||    
T  4420729 ttatagaaacaaattatgacatgttcataagctgttttcagcttatttccata 4420677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 7148748 - 7148712
Alignment:
Q  50 ggaaacaacttatgacatgttcataagctattttcaa 86  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  7148748 ggaaacaacttatgacttgtccataagctattttcaa 7148712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 135 - 179
Target Start/End: Original strand, 24836272 - 24836316
Alignment:
Q  135 ttatatgaaaagaatttgactttattttatctattattatagaaa 179  Q
    ||||| ||||| |||||||||||||||||||| || |||||||||    
T  24836272 ttatacgaaaacaatttgactttattttatcttttgttatagaaa 24836316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 25426177 - 25426133
Alignment:
Q  125 agcttacagcttatatgaaaagaatttgactttattttatctatt 169  Q
    |||||| |||||| ||||||  |||||||||||||||||||||||    
T  25426177 agcttatagcttacatgaaagcaatttgactttattttatctatt 25426133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 28660833 - 28660873
Alignment:
Q  135 ttatatgaaaagaatttgactttattttatctattattata 175  Q
    ||||||||||| ||||| ||||||||||||||||| |||||    
T  28660833 ttatatgaaaataatttaactttattttatctattgttata 28660873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 161; Significance: 1e-85; HSPs: 43)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 313 - 473
Target Start/End: Complemental strand, 29854754 - 29854594
Alignment:
Q  313 tctattaaggtatggctacaacaactcaaagatgctgtttatgtgctcgatgatatccttgatgagtgttcaatcaagtctggtcaacttagaggattaa 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29854754 tctattaaggtatggctacaacaactcaaagatgctgtttatgtgctcgatgatatccttgatgagtgttcaatcaagtctggtcaacttagaggattaa 29854655  T
Q  413 cctctttcaaaccaaagaacatcatgtttcgccatgagatcggcaacaggttgaaagagat 473  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29854654 cctctttcaaaccaaagaacatcatgtttcgccatgagatcggcaacaggttgaaagagat 29854594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 313 - 473
Target Start/End: Complemental strand, 29873617 - 29873457
Alignment:
Q  313 tctattaaggtatggctacaacaactcaaagatgctgtttatgtgctcgatgatatccttgatgagtgttcaatcaagtctggtcaacttagaggattaa 412  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||    
T  29873617 tctattaaggtatggctacaacaactcaaagatgttgtttatgtgctcgatgatatccttgatgagtgctcgatcaagtctggtcaacttagaggatcaa 29873518  T
Q  413 cctctttcaaaccaaagaacatcatgtttcgccatgagatcggcaacaggttgaaagagat 473  Q
     |||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  29873517 tctcttttaaaccaaataacatcatgtttcgccttgagatcggcaacaggttgaaagagat 29873457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 313 - 473
Target Start/End: Original strand, 30675951 - 30676111
Alignment:
Q  313 tctattaaggtatggctacaacaactcaaagatgctgtttatgtgctcgatgatatccttgatgagtgttcaatcaagtctggtcaacttagaggattaa 412  Q
    ||||||||| ||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |     
T  30675951 tctattaagctatggttacaagacctcaaagatgctgtttatgtgctcgatgatatccttgatgagtattcaatcaagtctggtcaacttagaggatcat 30676050  T
Q  413 cctctttcaaaccaaagaacatcatgtttcgccatgagatcggcaacaggttgaaagagat 473  Q
    ||||| ||||||||||||||||||||||||||  |||||||||||||||||| ||||||||    
T  30676051 cctctctcaaaccaaagaacatcatgtttcgcagtgagatcggcaacaggttaaaagagat 30676111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 313 - 473
Target Start/End: Original strand, 30337188 - 30337348
Alignment:
Q  313 tctattaaggtatggctacaacaactcaaagatgctgtttatgtgctcgatgatatccttgatgagtgttcaatcaagtctggtcaacttagaggattaa 412  Q
    ||||||||| ||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||  || ||| ||||| ||| ||| |||||||| |    
T  30337188 tctattaagctatggttacaagacctcaaagatgctgtttatgtgctcgatgatatccttgatgagtactcgatcgagtcttgtcgactgagaggattta 30337287  T
Q  413 cctctttcaaaccaaagaacatcatgtttcgccatgagatcggcaacaggttgaaagagat 473  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  30337288 cctctttcaaaccaaagaacatcaagtttcgccatgagatcggtaacaggttgaaagagat 30337348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 313 - 473
Target Start/End: Complemental strand, 30484844 - 30484684
Alignment:
Q  313 tctattaaggtatggctacaacaactcaaagatgctgtttatgtgctcgatgatatccttgatgagtgttcaatcaagtctggtcaacttagaggattaa 412  Q
    ||||||||| ||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||  || ||| ||||| ||| ||| |||||||| |    
T  30484844 tctattaagctatggttacaagacctcaaagatgctgtttatgtgctcgatgatatccttgatgagtactcgatcgagtcttgtcgactcagaggattta 30484745  T
Q  413 cctctttcaaaccaaagaacatcatgtttcgccatgagatcggcaacaggttgaaagagat 473  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  30484744 cctctttcaaaccaaagaacatcatgtttcgccatgagattggtaacaggttgaaagagat 30484684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 315 - 473
Target Start/End: Complemental strand, 30401518 - 30401360
Alignment:
Q  315 tattaaggtatggctacaacaactcaaagatgctgtttatgtgctcgatgatatccttgatgagtgttcaatcaagtctggtcaacttagaggattaacc 414  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| || |||| |||| | |  |    
T  30401518 tattaaggtatggctccaacaactcaaagatgctgtttatgtgctcgatgatatccttgatgagtgttcgatcgagtctgctcgacttggaggctcattc 30401419  T
Q  415 tctttcaaaccaaagaacatcatgtttcgccatgagatcggcaacaggttgaaagagat 473  Q
    |||||||| |||||||||||| ||||||||| | |||||||||||||||||||||||||    
T  30401418 tctttcaacccaaagaacatcgtgtttcgccgtcagatcggcaacaggttgaaagagat 30401360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 313 - 473
Target Start/End: Complemental strand, 30061815 - 30061655
Alignment:
Q  313 tctattaaggtatggctacaacaactcaaagatgctgtttatgtgctcgatgatatccttgatgagtgttcaatcaagtctggtcaacttagaggattaa 412  Q
    ||||||||| ||||| ||||| | |||||||||| ||||||||||||||||||||||||||||||||  || ||||||||| ||| ||| |||||||| |    
T  30061815 tctattaagctatggttacaagacctcaaagatggtgtttatgtgctcgatgatatccttgatgagtactcgatcaagtcttgtcgactgagaggattta 30061716  T
Q  413 cctctttcaaaccaaagaacatcatgtttcgccatgagatcggcaacaggttgaaagagat 473  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||    
T  30061715 cctctttcaaaccaaagaacatcatgtttcgccatgagattggtaacaggttcaaagagat 30061655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 313 - 473
Target Start/End: Complemental strand, 30751089 - 30750929
Alignment:
Q  313 tctattaaggtatggctacaacaactcaaagatgctgtttatgtgctcgatgatatccttgatgagtgttcaatcaagtctggtcaacttagaggattaa 412  Q
    ||||||||| ||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||  || || |||||| ||| ||| |||||||  |    
T  30751089 tctattaagctatggttacaagacctcaaagatgctgtttatgtgctcgatgatatccttgatgagtactcgattaagtcttgtcgactgagaggatgta 30750990  T
Q  413 cctctttcaaaccaaagaacatcatgtttcgccatgagatcggcaacaggttgaaagagat 473  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||    
T  30750989 cctctttcaaaccaaagaacatcatgtttcgccatgagattggtaacaggttaaaagagat 30750929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 313 - 473
Target Start/End: Original strand, 30712091 - 30712251
Alignment:
Q  313 tctattaaggtatggctacaacaactcaaagatgctgtttatgtgctcgatgatatccttgatgagtgttcaatcaagtctggtcaacttagaggattaa 412  Q
    ||||||||| ||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||  || ||| |||||  || ||| |||||||| |    
T  30712091 tctattaagctatggttacaagacctcaaagatgctgtttatgtgctcgatgatatccttgatgagtactcgatcgagtcttttcgactgagaggattta 30712190  T
Q  413 cctctttcaaaccaaagaacatcatgtttcgccatgagatcggcaacaggttgaaagagat 473  Q
    |||||||||||| ||||||||||||||||||||||||||| || |||||||| ||||||||    
T  30712191 cctctttcaaactaaagaacatcatgtttcgccatgagattggtaacaggttcaaagagat 30712251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 319 - 473
Target Start/End: Original strand, 17417337 - 17417491
Alignment:
Q  319 aaggtatggctacaacaactcaaagatgctgtttatgtgctcgatgatatccttgatgagtgttcaatcaagtctggtcaacttagaggattaacctctt 418  Q
    ||||||||||| |||||||||||||||| |||||||||||| |||||||| ||||||||||| |||||| |||||||||  |||||||| | | ||| ||    
T  17417337 aaggtatggcttcaacaactcaaagatgttgtttatgtgctagatgatattcttgatgagtgctcaatcgagtctggtcggcttagaggctcatcctatt 17417436  T
Q  419 tcaaaccaaagaacatcatgtttcgccatgagatcggcaacaggttgaaagagat 473  Q
    ||||||||||||||||||| ||||||| |||||||||| | |||||| |||||||    
T  17417437 tcaaaccaaagaacatcatatttcgccgtgagatcggccaaaggttggaagagat 17417491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 313 - 473
Target Start/End: Complemental strand, 30207965 - 30207805
Alignment:
Q  313 tctattaaggtatggctacaacaactcaaagatgctgtttatgtgctcgatgatatccttgatgagtgttcaatcaagtctggtcaacttagaggattaa 412  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||| || |||||  |  | |     
T  30207965 tctataaaggtatggctacaacaactcaaagatgctgtttatgtgctcgatgatatccttgatgagtgctcgatcgagtctgctcgacttattgcctcat 30207866  T
Q  413 cctctttcaaaccaaagaacatcatgtttcgccatgagatcggcaacaggttgaaagagat 473  Q
    | ||||||||||||||||||||||| ||| | | |||||| ||||| || |||||||||||    
T  30207865 catctttcaaaccaaagaacatcattttttgtcgtgagattggcaaaagattgaaagagat 30207805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 313 - 422
Target Start/End: Original strand, 30241056 - 30241165
Alignment:
Q  313 tctattaaggtatggctacaacaactcaaagatgctgtttatgtgctcgatgatatccttgatgagtgttcaatcaagtctggtcaacttagaggattaa 412  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||| ||| ||| ||||||||||    
T  30241056 tctattaaggtatggctgcaacaactcaaagatgttgtttatgtgctcgatgatatccttgatgagtgctcgatcaagtctagtcgactgagaggattaa 30241155  T
Q  413 cctctttcaa 422  Q
    ||||| ||||    
T  30241156 cctctctcaa 30241165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 313 - 453
Target Start/End: Original strand, 30329504 - 30329644
Alignment:
Q  313 tctattaaggtatggctacaacaactcaaagatgctgtttatgtgctcgatgatatccttgatgagtgttcaatcaagtctggtcaacttagaggattaa 412  Q
    ||||||||| ||||||| |||||| ||||||||| | | |||||||| |||||||||||||||||||| |  ||| ||||||||| | ||||||| | |     
T  30329504 tctattaagatatggcttcaacaaatcaaagatgatatatatgtgcttgatgatatccttgatgagtgcttgatcgagtctggtcgaattagaggctcat 30329603  T
Q  413 cctctttcaaaccaaagaacatcatgtttcgccatgagatc 453  Q
    ||||||||||||||||||||||  | |||||||||||||||    
T  30329604 cctctttcaaaccaaagaacattgtatttcgccatgagatc 30329644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 316 - 393
Target Start/End: Complemental strand, 30437238 - 30437161
Alignment:
Q  316 attaaggtatggctacaacaactcaaagatgctgtttatgtgctcgatgatatccttgatgagtgttcaatcaagtct 393  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  30437238 attaaggtatggctacaagacctcaaagatgctgtttatgtgctcgatgacatccttgatgagtgttcgatcaagtct 30437161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 313 - 470
Target Start/End: Complemental strand, 30476818 - 30476661
Alignment:
Q  313 tctattaaggtatggctacaacaactcaaagatgctgtttatgtgctcgatgatatccttgatgagtgttcaatcaagtctggtcaacttagaggattaa 412  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||| |||||||| |||||||| ||||| ||  | ||| ||  ||||| ||  |       
T  30476818 tctattaaggtatggctccaacaactcaaagatgctgtatatgtgcttgatgatattcttgatgaatgttccattgaatctagtagacttaaagcctcgt 30476719  T
Q  413 cctctttcaaaccaaagaacatcatgtttcgccatgagatcggcaacaggttgaaaga 470  Q
    ||| |||||| | |||||||||  ||||||||| ||| |||||||| |||||||||||    
T  30476718 cctgtttcaacctaaagaacattgtgtttcgccgtgacatcggcaaaaggttgaaaga 30476661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 124 - 179
Target Start/End: Complemental strand, 14295514 - 14295459
Alignment:
Q  124 cagcttacagcttatatgaaaagaatttgactttattttatctattattatagaaa 179  Q
    ||||||| |||||||||||||| | |||||||||||||||||| || |||||||||    
T  14295514 cagcttatagcttatatgaaaacagtttgactttattttatcttttgttatagaaa 14295459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 40 - 85
Target Start/End: Original strand, 11700356 - 11700401
Alignment:
Q  40 gagaatttatggaaacaacttatgacatgttcataagctattttca 85  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||||    
T  11700356 gagagtttatggaaacaacttatgacatgtccataagctgttttca 11700401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 179
Target Start/End: Original strand, 35135727 - 35135779
Alignment:
Q  127 cttacagcttatatgaaaagaatttgactttattttatctattattatagaaa 179  Q
    |||| |||||||||||||| | |||||||||||||||||| || |||||||||    
T  35135727 cttatagcttatatgaaaatagtttgactttattttatcttttgttatagaaa 35135779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 37611199 - 37611251
Alignment:
Q  46 ttatggaaacaacttatgacatgttcataagctattttcaagtaatttccata 98  Q
    ||||| ||||||||| ||||||||||||||||| |||||| || |||||||||    
T  37611199 ttatgaaaacaacttgtgacatgttcataagctgttttcaggttatttccata 37611251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 37787929 - 37787981
Alignment:
Q  46 ttatggaaacaacttatgacatgttcataagctattttcaagtaatttccata 98  Q
    ||||| ||||||||| ||||||||||||||||| |||||| || |||||||||    
T  37787929 ttatgaaaacaacttgtgacatgttcataagctgttttcaggttatttccata 37787981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 473
Target Start/End: Complemental strand, 17984323 - 17984170
Alignment:
Q  323 tatggctacaacaactcaaagatgctgtttatgtgctcgatgatatccttgatgagtgttcaatcaagtctggtcaacttagaggattaacctctt---t 419  Q
    ||||||| || |||||||||||||| || | |||||| ||||||||||| ||||| ||||| ||||| ||   |||| |||   | | | ||||||   |    
T  17984323 tatggctgcagcaactcaaagatgcggtgtttgtgcttgatgatatcctagatgaatgttcgatcaaatccactcaatttaagagttcatcctctttcat 17984224  T
Q  420 caaaccaaagaacatcatgtttcgccatgagatcggcaacaggttgaaagagat 473  Q
    ||| ||||||||| |||||||||||| ||| || ||||  ||||||||||||||    
T  17984223 caatccaaagaacttcatgtttcgccgtgacataggcagtaggttgaaagagat 17984170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 85
Target Start/End: Complemental strand, 32172739 - 32172700
Alignment:
Q  46 ttatggaaacaacttatgacatgttcataagctattttca 85  Q
    |||||||||||||||||||||||| ||||||| |||||||    
T  32172739 ttatggaaacaacttatgacatgtccataagccattttca 32172700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 179
Target Start/End: Original strand, 32969187 - 32969234
Alignment:
Q  132 agcttatatgaaaagaatttgactttattttatctattattatagaaa 179  Q
    ||||||||| |||| |||||||||||||||||||| || |||||||||    
T  32969187 agcttatataaaaataatttgactttattttatcttttgttatagaaa 32969234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 248
Target Start/End: Original strand, 39257460 - 39257575
Alignment:
Q  135 ttatatgaaaagaatttgactttattttatctattattatagaaaataacatataaa--agcacttacatgataagtgtctatgatataagc--ttaatt 230  Q
    ||||||||||||  ||||||||||||||| || || ||||||| | || |||||| |  ||||||||||||||||  || |||| |||||||  ||||||    
T  39257460 ttatatgaaaagg-tttgactttattttaccttttgttatagaga-tagcatatacataagcacttacatgataatagtttatgctataagcgcttaatt 39257557  T
Q  231 aatttgtttatccaaaca 248  Q
    || |||||||||||||||    
T  39257558 aagttgtttatccaaaca 39257575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 383
Target Start/End: Original strand, 30520288 - 30520358
Alignment:
Q  313 tctattaaggtatggctacaacaactcaaagatgctgtttatgtgctcgatgatatccttgatgagtgttc 383  Q
    ||||| ||||||||||| |||||||||||||||||  | ||  | || |||||||| ||||||||||||||    
T  30520288 tctataaaggtatggcttcaacaactcaaagatgcaatctacatactagatgatattcttgatgagtgttc 30520358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 383
Target Start/End: Original strand, 30560628 - 30560698
Alignment:
Q  313 tctattaaggtatggctacaacaactcaaagatgctgtttatgtgctcgatgatatccttgatgagtgttc 383  Q
    ||||| ||||||||||| |||||||||||||||||  | ||  | || |||||||| ||||||||||||||    
T  30560628 tctataaaggtatggcttcaacaactcaaagatgcaatctacatactagatgatattcttgatgagtgttc 30560698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 166
Target Start/End: Original strand, 32059651 - 32059693
Alignment:
Q  124 cagcttacagcttatatgaaaagaatttgactttattttatct 166  Q
    ||||||| |||||||||||||| | ||||||||||||||||||    
T  32059651 cagcttatagcttatatgaaaacagtttgactttattttatct 32059693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 7853733 - 7853688
Alignment:
Q  40 gagaatttatggaaacaacttatgaca-tgttcataagctattttc 84  Q
    ||||| ||||||||||||||||||||| |||||||||||| |||||    
T  7853733 gagaacttatggaaacaacttatgacattgttcataagctgttttc 7853688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 171
Target Start/End: Complemental strand, 10363162 - 10363125
Alignment:
Q  134 cttatatgaaaagaatttgactttattttatctattat 171  Q
    |||||||| |||||||||||||||||||||||| ||||    
T  10363162 cttatatggaaagaatttgactttattttatcttttat 10363125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 189
Target Start/End: Original strand, 29117000 - 29117056
Alignment:
Q  132 agcttatatgaaaagaatttgactttattttatctattattatagaaaataacatata 189  Q
    |||||||| ||||| | |||||||||||||||||| || |||||| ||||||||||||    
T  29117000 agcttatacgaaaacagtttgactttattttatcttttgttatag-aaataacatata 29117056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 179
Target Start/End: Original strand, 37063146 - 37063191
Alignment:
Q  134 cttatatgaaaagaatttgactttattttatctattattatagaaa 179  Q
    |||||||||||| | |||||||||||||||||| || |||||||||    
T  37063146 cttatatgaaaatagtttgactttattttatcttttgttatagaaa 37063191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 83
Target Start/End: Original strand, 37794682 - 37794719
Alignment:
Q  46 ttatggaaacaacttatgacatgttcataagctatttt 83  Q
    ||||| ||||||||||||||||||||||||||| ||||    
T  37794682 ttatgaaaacaacttatgacatgttcataagctgtttt 37794719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 139 - 179
Target Start/End: Original strand, 6738484 - 6738524
Alignment:
Q  139 atgaaaagaatttgactttattttatctattattatagaaa 179  Q
    |||||||||||||||||||||||| ||| ||||||| ||||    
T  6738484 atgaaaagaatttgactttattttgtcttttattattgaaa 6738524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 7674739 - 7674695
Alignment:
Q  41 agaatttatggaaacaacttatgacatgttcataagctattttca 85  Q
    |||| ||||||||||||||||||||||||| ||||| | ||||||    
T  7674739 agaacttatggaaacaacttatgacatgtttataaggtgttttca 7674695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 10303794 - 10303754
Alignment:
Q  139 atgaaaagaatttgactttattttatctattattatagaaa 179  Q
    ||||||| |||||||||||||||||||| || |||||||||    
T  10303794 atgaaaacaatttgactttattttatcttttgttatagaaa 10303754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 78
Target Start/End: Complemental strand, 11457184 - 11457152
Alignment:
Q  46 ttatggaaacaacttatgacatgttcataagct 78  Q
    |||||||||||||||||||||||| ||||||||    
T  11457184 ttatggaaacaacttatgacatgtccataagct 11457152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 135 - 179
Target Start/End: Original strand, 12595813 - 12595857
Alignment:
Q  135 ttatatgaaaagaatttgactttattttatctattattatagaaa 179  Q
    ||||||||||| ||||| |||||||||||||| || |||||||||    
T  12595813 ttatatgaaaacaatttaactttattttatcttttgttatagaaa 12595857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 12975355 - 12975315
Alignment:
Q  124 cagcttacagcttatatgaaaagaatttgactttattttat 164  Q
    ||||||| |||||||||||||| ||||||| ||||||||||    
T  12975355 cagcttatagcttatatgaaaacaatttgattttattttat 12975315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 135 - 179
Target Start/End: Original strand, 28586839 - 28586883
Alignment:
Q  135 ttatatgaaaagaatttgactttattttatctattattatagaaa 179  Q
    ||||||||||| | |||||||||||||||||| || |||||||||    
T  28586839 ttatatgaaaacagtttgactttattttatcttttgttatagaaa 28586883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 78
Target Start/End: Original strand, 38047863 - 38047895
Alignment:
Q  46 ttatggaaacaacttatgacatgttcataagct 78  Q
    |||||||||||||||||||||||| ||||||||    
T  38047863 ttatggaaacaacttatgacatgtccataagct 38047895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 83
Target Start/End: Complemental strand, 39105557 - 39105513
Alignment:
Q  40 gagaatttatggaaacaacttatgaca-tgttcataagctatttt 83  Q
    ||||||||||| ||||| ||||||||| |||||||||||||||||    
T  39105557 gagaatttatgaaaacagcttatgacattgttcataagctatttt 39105513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 78
Target Start/End: Original strand, 40499710 - 40499742
Alignment:
Q  46 ttatggaaacaacttatgacatgttcataagct 78  Q
    |||||||||||||||||||||||| ||||||||    
T  40499710 ttatggaaacaacttatgacatgtccataagct 40499742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 41052954 - 41052902
Alignment:
Q  46 ttatggaaacaacttatgacatgttcataagctattttcaagtaatttccata 98  Q
    |||| |||||||| |||||||||||||||| ||||||| || | |||||||||    
T  41052954 ttatagaaacaacctatgacatgttcataaactatttttaacttatttccata 41052902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 156; Significance: 1e-82; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 43 - 287
Target Start/End: Original strand, 29262855 - 29263095
Alignment:
Q  43 aatttatggaaacaacttatgacatgttcataagctattttcaagtaatttccatagattctctagatttgcaaatgatatcagcttacagcttatatga 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||  |||||||||| |||||||||||||||||||||    
T  29262855 aatttatggaaacaacttatgacatgttcataagctattttcaagtaatttccgtaaactctctaggattgcaaatgaaatcagcttacagcttatatga 29262954  T
Q  143 aaagaatttgactttattttatctattattatagaaaataacatataaaagcacttacatgataagtgtctatgatataagcttaattaatttgtttatc 242  Q
    ||| ||||||||||||||||||||  ||||||||||||||||||||| || |||||| |||| ||||||||||| | ||||||||||||| |||||||||    
T  29262955 aaataatttgactttattttatcttctattatagaaaataacatatataaacacttatatgagaagtgtctatgttgtaagcttaattaagttgtttatc 29263054  T
Q  243 caaacatggaaaatacaagcgaacgaaaatagtcaattttagaaa 287  Q
    |||||||    |||||||||||| ||||||| |||||||||||||    
T  29263055 caaacat----aatacaagcgaatgaaaataatcaattttagaaa 29263095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 124 - 179
Target Start/End: Original strand, 1470918 - 1470973
Alignment:
Q  124 cagcttacagcttatatgaaaagaatttgactttattttatctattattatagaaa 179  Q
    ||||||| |||||||||||||  |||||||||||||||||||| ||||||||||||    
T  1470918 cagcttatagcttatatgaaagtaatttgactttattttatcttttattatagaaa 1470973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 124 - 179
Target Start/End: Complemental strand, 4558806 - 4558751
Alignment:
Q  124 cagcttacagcttatatgaaaagaatttgactttattttatctattattatagaaa 179  Q
    ||||||| ||| |||||||||| ||||| |||||||||||||| ||||||||||||    
T  4558806 cagcttatagcatatatgaaaataatttaactttattttatcttttattatagaaa 4558751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 46 - 83
Target Start/End: Original strand, 30987975 - 30988012
Alignment:
Q  46 ttatggaaacaacttatgacatgttcataagctatttt 83  Q
    |||||||||||||||||||||||| |||||||||||||    
T  30987975 ttatggaaacaacttatgacatgtccataagctatttt 30988012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 123 - 163
Target Start/End: Original strand, 7878547 - 7878587
Alignment:
Q  123 tcagcttacagcttatatgaaaagaatttgactttatttta 163  Q
    |||||||| |||||||||||||| |||||||||||||||||    
T  7878547 tcagcttatagcttatatgaaaacaatttgactttatttta 7878587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 208
Target Start/End: Complemental strand, 11494150 - 11494076
Alignment:
Q  135 ttatatgaaaagaatttgactttattttatctattattatagaaaataacatat--aaaagcacttacatgataag 208  Q
    ||||||||||| | ||||||||||| |||||| || |||| |||||||||||||  ||||||||||| ||||||||    
T  11494150 ttatatgaaaaaagtttgactttatgttatcttttgttat-gaaaataacatatacaaaagcacttatatgataag 11494076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 31875579 - 31875619
Alignment:
Q  46 ttatggaaacaacttatgacatgttcataagctattttcaa 86  Q
    |||||||||||||||||||||||| ||||||| ||||||||    
T  31875579 ttatggaaacaacttatgacatgtccataagccattttcaa 31875619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 43368684 - 43368724
Alignment:
Q  46 ttatggaaacaacttatgacatgttcataagctattttcaa 86  Q
    ||||| |||||||||||||||||||||| ||||||||||||    
T  43368684 ttatgaaaacaacttatgacatgttcattagctattttcaa 43368724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 179
Target Start/End: Complemental strand, 12361200 - 12361145
Alignment:
Q  124 cagcttacagcttatatgaaaagaatttgactttattttatctattattatagaaa 179  Q
    ||||||| |||||||||||||| |||||||||| ||||||||| |  |||||||||    
T  12361200 cagcttatagcttatatgaaaacaatttgacttcattttatctttatttatagaaa 12361145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 83
Target Start/End: Original strand, 39551187 - 39551230
Alignment:
Q  40 gagaatttatggaaacaacttatgacatgttcataagctatttt 83  Q
    |||||||||||||||||||||||||||||| || ||||| ||||    
T  39551187 gagaatttatggaaacaacttatgacatgtccaaaagctgtttt 39551230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 179
Target Start/End: Original strand, 28784858 - 28784912
Alignment:
Q  125 agcttacagcttatatgaaaagaatttgactttattttatctattattatagaaa 179  Q
    |||||||| || |||| |||| |||||||||||||||||||| ||||| ||||||    
T  28784858 agcttacaactgatatcaaaacaatttgactttattttatcttttattttagaaa 28784912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 98
Target Start/End: Original strand, 37740405 - 37740462
Alignment:
Q  40 gagaatttatggaaacaacttatgacatgttcataagctattttcaagtaatttccata 98  Q
    |||| ||||||||||||||||||||||||| ||||| |||||||||  | |||||||||    
T  37740405 gagagtttatggaaacaacttatgacatgtccataa-ctattttcagcttatttccata 37740462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 166
Target Start/End: Complemental strand, 38874654 - 38874612
Alignment:
Q  124 cagcttacagcttatatgaaaagaatttgactttattttatct 166  Q
    ||||||| ||||||||||||||||||||||||  |||||||||    
T  38874654 cagcttagagcttatatgaaaagaatttgactcgattttatct 38874612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 926567 - 926530
Alignment:
Q  40 gagaatttatggaaacaacttatgacatgttcataagc 77  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  926567 gagaatttatcaaaacaacttatgacatgttcataagc 926530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 25867088 - 25867039
Alignment:
Q  130 acagcttatatgaaaagaatttgactttattttatctattattatagaaa 179  Q
    |||||||||||||||| | ||||||||||||| |||| || |||||||||    
T  25867088 acagcttatatgaaaatattttgactttatttcatcttttgttatagaaa 25867039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 35374428 - 35374477
Alignment:
Q  117 atgatatcagcttacagcttatatgaaaagaatttgactttattttatct 166  Q
    |||| ||||| ||| |||||||||||||| ||||| ||||||||||||||    
T  35374428 atgaaatcagattatagcttatatgaaaacaatttaactttattttatct 35374477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 75
Target Start/End: Complemental strand, 40071835 - 40071806
Alignment:
Q  46 ttatggaaacaacttatgacatgttcataa 75  Q
    ||||||||||||||||||||||||||||||    
T  40071835 ttatggaaacaacttatgacatgttcataa 40071806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 76
Target Start/End: Complemental strand, 4390305 - 4390269
Alignment:
Q  40 gagaatttatggaaacaacttatgacatgttcataag 76  Q
    ||||||||||| |||||||||||| ||||||||||||    
T  4390305 gagaatttatgaaaacaacttatggcatgttcataag 4390269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 9835884 - 9835936
Alignment:
Q  46 ttatggaaacaacttatgacatgttcataagctattttcaagtaatttccata 98  Q
    ||||| ||||| ||||||||||||||||||||| ||||||  | |||||||||    
T  9835884 ttatgtaaacagcttatgacatgttcataagctgttttcatcttatttccata 9835936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 135 - 179
Target Start/End: Original strand, 27728094 - 27728138
Alignment:
Q  135 ttatatgaaaagaatttgactttattttatctattattatagaaa 179  Q
    ||||||||||| | |||||||||||||||||| || |||||||||    
T  27728094 ttatatgaaaatagtttgactttattttatctttttttatagaaa 27728138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 42237492 - 42237540
Alignment:
Q  132 agcttatatgaaaagaatttgactttattttatctattattatagaaaa 180  Q
    |||||||||||||| ||||| |||||||||||||| || ||||| ||||    
T  42237492 agcttatatgaaaacaatttaactttattttatcttttgttataaaaaa 42237540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 2e-47; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 313 - 473
Target Start/End: Original strand, 25292610 - 25292770
Alignment:
Q  313 tctattaaggtatggctacaacaactcaaagatgctgtttatgtgctcgatgatatccttgatgagtgttcaatcaagtctggtcaacttagaggattaa 412  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |  ||||| ||| ||| ||||||||| | |     
T  25292610 tctattaaggtatggctacaacaactcaaagatgttgtatatgtgctcgatgatatccttgatgagtgattgatcaaatctagtcgacttagaggctcat 25292709  T
Q  413 cctctttcaaaccaaagaacatcatgtttcgccatgagatcggcaacaggttgaaagagat 473  Q
    |||||||||||||||||||||||||||||| |||| | || ||||||| ||||||||||||    
T  25292710 cctctttcaaaccaaagaacatcatgtttcaccattacattggcaacaagttgaaagagat 25292770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 132 - 179
Target Start/End: Complemental strand, 1395671 - 1395624
Alignment:
Q  132 agcttatatgaaaagaatttgactttattttatctattattatagaaa 179  Q
    |||||||||||||| |||||||||||||||||||| || |||||||||    
T  1395671 agcttatatgaaaataatttgactttattttatcttttgttatagaaa 1395624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 136 - 179
Target Start/End: Complemental strand, 26990730 - 26990687
Alignment:
Q  136 tatatgaaaagaatttgactttattttatctattattatagaaa 179  Q
    ||||||||||||||||||||||||||||||| || |||||||||    
T  26990730 tatatgaaaagaatttgactttattttatcttttgttatagaaa 26990687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 42745129 - 42745072
Alignment:
Q  41 agaatttatggaaacaacttatgacatgttcataagctattttcaagtaatttccata 98  Q
    |||||||||| ||||||||||||||||||||||||| | ||||||  | |||||||||    
T  42745129 agaatttatgtaaacaacttatgacatgttcataagttgttttcatcttatttccata 42745072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 137 - 181
Target Start/End: Complemental strand, 25195419 - 25195375
Alignment:
Q  137 atatgaaaagaatttgactttattttatctattattatagaaaat 181  Q
    ||||||||| |||||||||||||||||||| || |||||||||||    
T  25195419 atatgaaaataatttgactttattttatcttttgttatagaaaat 25195375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 37273220 - 37273168
Alignment:
Q  46 ttatggaaacaacttatgacatgttcataagctattttcaagtaatttccata 98  Q
    |||||||||||||||||||||||| |||||| | ||||||| | |||||||||    
T  37273220 ttatggaaacaacttatgacatgtccataagttgttttcaacttatttccata 37273168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 86
Target Start/End: Original strand, 3044248 - 3044283
Alignment:
Q  51 gaaacaacttatgacatgttcataagctattttcaa 86  Q
    |||||||||||||||||||||||||||| |||||||    
T  3044248 gaaacaacttatgacatgttcataagctgttttcaa 3044283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 179
Target Start/End: Original strand, 24887353 - 24887400
Alignment:
Q  132 agcttatatgaaaagaatttgactttattttatctattattatagaaa 179  Q
    |||||||||||| | | ||||||||||||||||||||| |||||||||    
T  24887353 agcttatatgaatacagtttgactttattttatctattgttatagaaa 24887400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 95
Target Start/End: Original strand, 29427623 - 29427678
Alignment:
Q  40 gagaatttatggaaacaacttatgacatgttcataagctattttcaagtaatttcc 95  Q
    ||||| ||||| ||||| || |||||||||||||||||||||||||| | ||||||    
T  29427623 gagaacttatgaaaacacctaatgacatgttcataagctattttcaacttatttcc 29427678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 179
Target Start/End: Complemental strand, 32703138 - 32703091
Alignment:
Q  132 agcttatatgaaaagaatttgactttattttatctattattatagaaa 179  Q
    |||||||||||||| ||||||| |||||||||||| |||| |||||||    
T  32703138 agcttatatgaaaacaatttgagtttattttatcttttataatagaaa 32703091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 179
Target Start/End: Original strand, 49586986 - 49587033
Alignment:
Q  132 agcttatatgaaaagaatttgactttattttatctattattatagaaa 179  Q
    |||||||||||||| | |||||||||||||||||| || |||||||||    
T  49586986 agcttatatgaaaacagtttgactttattttatcttttgttatagaaa 49587033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 85
Target Start/End: Complemental strand, 50004738 - 50004699
Alignment:
Q  46 ttatggaaacaacttatgacatgttcataagctattttca 85  Q
    |||||||||||||||||||||||||| |||||| ||||||    
T  50004738 ttatggaaacaacttatgacatgttcttaagctgttttca 50004699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 98
Target Start/End: Complemental strand, 38319040 - 38318994
Alignment:
Q  52 aaacaacttatgacatgttcataagctattttcaagtaatttccata 98  Q
    ||||||||||| ||||||||||||||||||||||  | |||||||||    
T  38319040 aaacaacttataacatgttcataagctattttcagcttatttccata 38318994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 189
Target Start/End: Complemental strand, 48397651 - 48397590
Alignment:
Q  127 cttacagcttatatgaaaagaatttgactttattttatctattattatagaaaataacatata 189  Q
    |||| |||||| || |||| |||||||||||||||||||| |||||||| |||||||| ||||    
T  48397651 cttatagcttaaataaaaacaatttgactttattttatcttttattata-aaaataacttata 48397590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 86
Target Start/End: Original strand, 2152161 - 2152202
Alignment:
Q  45 tttatggaaacaacttatgacatgttcataagctattttcaa 86  Q
    |||||| |||||||||||||||||||| |||||| |||||||    
T  2152161 tttatgaaaacaacttatgacatgttcgtaagctgttttcaa 2152202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 179
Target Start/End: Original strand, 10101548 - 10101593
Alignment:
Q  134 cttatatgaaaagaatttgactttattttatctattattatagaaa 179  Q
    |||||||||||| ||||| |||||||||||||| || |||||||||    
T  10101548 cttatatgaaaacaatttaactttattttatcttttgttatagaaa 10101593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 179
Target Start/End: Original strand, 10212473 - 10212518
Alignment:
Q  134 cttatatgaaaagaatttgactttattttatctattattatagaaa 179  Q
    |||||||||||| ||||| |||||||||||||| || |||||||||    
T  10212473 cttatatgaaaacaatttaactttattttatcttttgttatagaaa 10212518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 251
Target Start/End: Complemental strand, 38462277 - 38462159
Alignment:
Q  136 tatatgaaaagaatttgactttattttatctattattatagaaaataacatataa--aagcacttacatgataagtgtctatgatata--agcttaatta 231  Q
    |||||||||| | |||||||||||||||||| ||  ||||| ||||| | |||||  || |||||| ||||||||||| |||| | ||   |||||||||    
T  38462277 tatatgaaaacagtttgactttattttatcttttggtatag-aaatagcttataaataaacacttatatgataagtgtttatgctttaggcgcttaatta 38462179  T
Q  232 atttgtttatccaaacatgg 251  Q
    | |||||||||| |||||||    
T  38462178 acttgtttatcctaacatgg 38462159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 42808981 - 42808932
Alignment:
Q  130 acagcttatatgaaaagaatttgactttattttatctattattatagaaa 179  Q
    ||||||||||| |||| ||||| |||||||||||||| || |||||||||    
T  42808981 acagcttatataaaaacaatttaactttattttatcttttgttatagaaa 42808932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 42809303 - 42809254
Alignment:
Q  130 acagcttatatgaaaagaatttgactttattttatctattattatagaaa 179  Q
    |||||||||||||||| ||||| ||| |||||||||| || |||||||||    
T  42809303 acagcttatatgaaaacaatttaactatattttatcttttgttatagaaa 42809254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 85
Target Start/End: Complemental strand, 52619083 - 52619050
Alignment:
Q  52 aaacaacttatgacatgttcataagctattttca 85  Q
    |||||| |||||||||||||||||||||||||||    
T  52619083 aaacaatttatgacatgttcataagctattttca 52619050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 5391965 - 5391925
Alignment:
Q  46 ttatggaaacaacttatgacatgttcataagctattttcaa 86  Q
    ||||| ||||| ||||||||||||||||||||| |||||||    
T  5391965 ttatgaaaacagcttatgacatgttcataagctgttttcaa 5391925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 94
Target Start/End: Original strand, 10073200 - 10073248
Alignment:
Q  46 ttatggaaacaacttatgacatgttcataagctattttcaagtaatttc 94  Q
    |||||| |||||||||||||||||  |||||||||||| |||| |||||    
T  10073200 ttatgggaacaacttatgacatgtatataagctatttttaagttatttc 10073248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 135 - 179
Target Start/End: Original strand, 15304420 - 15304464
Alignment:
Q  135 ttatatgaaaagaatttgactttattttatctattattatagaaa 179  Q
    ||||||||||| ||||| |||||||||||||| || |||||||||    
T  15304420 ttatatgaaaacaatttaactttattttatcttttgttatagaaa 15304464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 20192590 - 20192642
Alignment:
Q  46 ttatggaaacaacttatgacatgttcataagctattttcaagtaatttccata 98  Q
    |||| |||||| |||||||||||| |||||||| ||||||| | |||||||||    
T  20192590 ttatagaaacagcttatgacatgtccataagctgttttcaactcatttccata 20192642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 78
Target Start/End: Complemental strand, 21574576 - 21574544
Alignment:
Q  46 ttatggaaacaacttatgacatgttcataagct 78  Q
    ||||| |||||||||||||||||||||||||||    
T  21574576 ttatgaaaacaacttatgacatgttcataagct 21574544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 42530239 - 42530187
Alignment:
Q  127 cttacagcttatatgaaaagaatttgactttattttatctattattatagaaa 179  Q
    |||||| ||||||| |||||||||| |||||||||||  | ||||||||||||    
T  42530239 cttacaacttatataaaaagaattttactttattttactttttattatagaaa 42530187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 45541662 - 45541618
Alignment:
Q  41 agaatttatggaaacaacttatgacatgttcataagctattttca 85  Q
    |||| ||||| ||||| ||||||||||||||||||||| ||||||    
T  45541662 agaacttatgaaaacagcttatgacatgttcataagctgttttca 45541618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 49465920 - 49465972
Alignment:
Q  46 ttatggaaacaacttatgacatgttcataagctattttcaagtaatttccata 98  Q
    |||| ||||||||||||||||||| ||| | |||||||||| | |||||||||    
T  49465920 ttatagaaacaacttatgacatgtccatgaactattttcaacttatttccata 49465972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 6e-38; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 313 - 473
Target Start/End: Original strand, 20295245 - 20295405
Alignment:
Q  313 tctattaaggtatggctacaacaactcaaagatgctgtttatgtgctcgatgatatccttgatgagtgttcaatcaagtctggtcaacttagaggattaa 412  Q
    |||||||||  |||| ||||| | ||||||||||||||||||||||||| |||||||||||||||||  || ||| ||||||||| ||| |||||||| |    
T  20295245 tctattaagcaatggttacaagacctcaaagatgctgtttatgtgctcggtgatatccttgatgagtactcgatcgagtctggtcgactgagaggattta 20295344  T
Q  413 cctctttcaaaccaaagaacatcatgtttcgccatgagatcggcaacaggttgaaagagat 473  Q
     |||||||||||||| |||||||  |||||||||||||||||| | |||||| ||||||||    
T  20295345 actctttcaaaccaatgaacatcgcgtttcgccatgagatcggtagcaggtttaaagagat 20295405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 313 - 470
Target Start/End: Complemental strand, 52353404 - 52353247
Alignment:
Q  313 tctattaaggtatggctacaacaactcaaagatgctgtttatgtgctcgatgatatccttgatgagtgttcaatcaagtctggtcaacttagaggattaa 412  Q
    |||||||| |||||||| || |||||||||||||||||||| || |||||||||||||||||||| ||||| ||||| ||| ||| |||||  || |||     
T  52353404 tctattaaagtatggcttcagcaactcaaagatgctgtttacgttctcgatgatatccttgatgaatgttcgatcaaatctagtcgacttatgggtttat 52353305  T
Q  413 cctctttcaaaccaaagaacatcatgtttcgccatgagatcggcaacaggttgaaaga 470  Q
    | || ||||||||||| || ||  ||||||| ||||| || || ||||| ||||||||    
T  52353304 cgtcattcaaaccaaaaaatattgtgtttcgtcatgatattggaaacagattgaaaga 52353247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 134 - 179
Target Start/End: Original strand, 31038939 - 31038984
Alignment:
Q  134 cttatatgaaaagaatttgactttattttatctattattatagaaa 179  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||    
T  31038939 cttatatgaaaacaatttgactttattttatctattattgtagaaa 31038984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 4071887 - 4071835
Alignment:
Q  127 cttacagcttatatgaaaagaatttgactttattttatctattattatagaaa 179  Q
    |||| |||||||||||||| |||||||||||||||||||| || |||||||||    
T  4071887 cttatagcttatatgaaaataatttgactttattttatcttttgttatagaaa 4071835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 52 - 98
Target Start/End: Original strand, 6466036 - 6466082
Alignment:
Q  52 aaacaacttatgacatgttcataagctattttcaagtaatttccata 98  Q
    ||||||||||||| ||||||||||||||||||||| | |||||||||    
T  6466036 aaacaacttatgagatgttcataagctattttcaacttatttccata 6466082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 6987725 - 6987777
Alignment:
Q  46 ttatggaaacaacttatgacatgttcataagctattttcaagtaatttccata 98  Q
    ||||||| |||||||||||||||| ||||| |||||||||| | |||||||||    
T  6987725 ttatggatacaacttatgacatgtccataaactattttcaacttatttccata 6987777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 27725300 - 27725248
Alignment:
Q  46 ttatggaaacaacttatgacatgttcataagctattttcaagtaatttccata 98  Q
    ||||||||| |||||||||||||| ||||| |||||||||| | |||||||||    
T  27725300 ttatggaaataacttatgacatgtccataaactattttcaaatgatttccata 27725248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 49219144 - 49219092
Alignment:
Q  127 cttacagcttatatgaaaagaatttgactttattttatctattattatagaaa 179  Q
    |||| |||||||||||||| |||||||||||||||||| | || |||||||||    
T  49219144 cttatagcttatatgaaaataatttgactttattttatattttgttatagaaa 49219092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 53626784 - 53626728
Alignment:
Q  124 cagcttacagcttatatgaaaagaatttgactttattttatctattattatagaaaa 180  Q
    ||||||| |||||||||||||| | ||||| |||||||||||| || ||||||||||    
T  53626784 cagcttatagcttatatgaaaacattttgaatttattttatcttttgttatagaaaa 53626728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 84
Target Start/End: Original strand, 2874603 - 2874646
Alignment:
Q  41 agaatttatggaaacaacttatgacatgttcataagctattttc 84  Q
    |||| |||||||||||||||||||||||| ||||| ||||||||    
T  2874603 agaacttatggaaacaacttatgacatgtccataatctattttc 2874646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 179
Target Start/End: Complemental strand, 8130174 - 8130127
Alignment:
Q  132 agcttatatgaaaagaatttgactttattttatctattattatagaaa 179  Q
    |||||||||||||| ||||||||||||| |||||| || |||||||||    
T  8130174 agcttatatgaaaataatttgactttatgttatcttttgttatagaaa 8130127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 166
Target Start/End: Original strand, 13949909 - 13949948
Alignment:
Q  127 cttacagcttatatgaaaagaatttgactttattttatct 166  Q
    |||| |||||||||||||| ||||||||||||||||||||    
T  13949909 cttatagcttatatgaaaacaatttgactttattttatct 13949948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 179
Target Start/End: Complemental strand, 30024700 - 30024653
Alignment:
Q  132 agcttatatgaaaagaatttgactttattttatctattattatagaaa 179  Q
    |||||||||||||| ||||| |||||||||||||| || |||||||||    
T  30024700 agcttatatgaaaacaattttactttattttatcttttgttatagaaa 30024653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 96
Target Start/End: Complemental strand, 1966027 - 1965977
Alignment:
Q  46 ttatggaaacaacttatgacatgttcataagctattttcaagtaatttcca 96  Q
    ||||| ||||||||||||||||||||||||||| |||| || | |||||||    
T  1966027 ttatgaaaacaacttatgacatgttcataagctgtttttaacttatttcca 1965977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 163
Target Start/End: Complemental strand, 21952968 - 21952930
Alignment:
Q  125 agcttacagcttatatgaaaagaatttgactttatttta 163  Q
    |||||| |||||||||||||| |||||||||||||||||    
T  21952968 agcttatagcttatatgaaaacaatttgactttatttta 21952930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 98
Target Start/End: Original strand, 22662225 - 22662283
Alignment:
Q  40 gagaatttatggaaacaacttatgacatgttcataagctattttcaagtaatttccata 98  Q
    ||||| ||||| ||| ||||||||| ||||||||||||||||||||  | |||||||||    
T  22662225 gagaacttatgaaaaaaacttatgatatgttcataagctattttcagcttatttccata 22662283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 98
Target Start/End: Original strand, 22666704 - 22666762
Alignment:
Q  40 gagaatttatggaaacaacttatgacatgttcataagctattttcaagtaatttccata 98  Q
    ||||| ||||| ||| ||||||||| ||||||||||||||||||||  | |||||||||    
T  22666704 gagaacttatgaaaaaaacttatgatatgttcataagctattttcagtttatttccata 22666762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 251
Target Start/End: Complemental strand, 50298461 - 50298408
Alignment:
Q  200 catgataagtgtctatgatataagctt--aattaatttgtttatccaaacatgg 251  Q
    |||||||||||| |||| |||||||||  |||||| ||||||||||||||||||    
T  50298461 catgataagtgtttatgctataagcttcaaattaagttgtttatccaaacatgg 50298408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 179
Target Start/End: Original strand, 54325100 - 54325154
Alignment:
Q  125 agcttacagcttatatgaaaagaatttgactttattttatctattattatagaaa 179  Q
    |||||| |||||||||||||| | |||||||||||||||||| || | |||||||    
T  54325100 agcttatagcttatatgaaaacagtttgactttattttatcttttgtaatagaaa 54325154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 179
Target Start/End: Complemental strand, 6364155 - 6364102
Alignment:
Q  126 gcttacagcttatatgaaaagaatttgactttattttatctattattatagaaa 179  Q
    ||||| ||||||| |||| ||||||| |||||||||||||| || |||||||||    
T  6364155 gcttatagcttatgtgaacagaatttcactttattttatcttttgttatagaaa 6364102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 163
Target Start/End: Original strand, 22684584 - 22684617
Alignment:
Q  130 acagcttatatgaaaagaatttgactttatttta 163  Q
    |||||||||||||||| |||||||||||||||||    
T  22684584 acagcttatatgaaaacaatttgactttatttta 22684617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 175
Target Start/End: Original strand, 41701509 - 41701554
Alignment:
Q  130 acagcttatatgaaaagaatttgactttattttatctattattata 175  Q
    ||||||||||||||||  ||||||||||||||||||| || |||||    
T  41701509 acagcttatatgaaaacgatttgactttattttatcttttgttata 41701554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 2996659 - 2996619
Alignment:
Q  46 ttatggaaacaacttatgacatgttcataagctattttcaa 86  Q
    ||||| |||||||||||||||||| |||||||| |||||||    
T  2996659 ttatgaaaacaacttatgacatgtccataagcttttttcaa 2996619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 135 - 187
Target Start/End: Complemental strand, 11917556 - 11917505
Alignment:
Q  135 ttatatgaaaagaatttgactttattttatctattattatagaaaataacata 187  Q
    ||||||||||| |||||||||||||||||||| || ||| | |||||||||||    
T  11917556 ttatatgaaaataatttgactttattttatcttttgttaca-aaaataacata 11917505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 20936213 - 20936265
Alignment:
Q  46 ttatggaaacaacttatgacatgttcataagctattttcaagtaatttccata 98  Q
    ||||| ||||||||||||| ||||||||||||| ||||||  | |||||||||    
T  20936213 ttatgaaaacaacttatgatatgttcataagctgttttcaccttatttccata 20936265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 41097240 - 41097280
Alignment:
Q  46 ttatggaaacaacttatgacatgttcataagctattttcaa 86  Q
    |||| ||||||||| ||||||||| ||||||||||||||||    
T  41097240 ttatagaaacaactaatgacatgtccataagctattttcaa 41097280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 76
Target Start/End: Complemental strand, 46401356 - 46401320
Alignment:
Q  40 gagaatttatggaaacaacttatgacatgttcataag 76  Q
    ||||||||||| | |||||||||||||||||||||||    
T  46401356 gagaatttatgtacacaacttatgacatgttcataag 46401320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 132 - 164
Target Start/End: Original strand, 55437356 - 55437388
Alignment:
Q  132 agcttatatgaaaagaatttgactttattttat 164  Q
    |||||||||||||| ||||||||||||||||||    
T  55437356 agcttatatgaaaataatttgactttattttat 55437388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 154 - 287
Target Start/End: Original strand, 5744 - 5879
Alignment:
Q  154 ctttattttatctattattatagaaaataacat--ataaaagcacttacatgataagtgtctatgatataagcttaattaatttgtttatccaaacatgg 251  Q
    ||||||||||||| | ||||||||||||||| |  ||| ||||||||| ||||||||||| |||  |||||||||||||||  | || ||| ||||||||    
T  5744 ctttattttatctttaattatagaaaataacttgtatataagcacttatatgataagtgtttatactataagcttaattaagctattaatctaaacatgg 5843  T
Q  252 aaaatacaagcgaacgaaaatagtcaattttagaaa 287  Q
      |||| |  |||||||||||||||||||| |||||    
T  5844 gcaatatacacgaacgaaaatagtcaatttcagaaa 5879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 166
Target Start/End: Original strand, 18437 - 18471
Alignment:
Q  132 agcttatatgaaaagaatttgactttattttatct 166  Q
    |||||||||||||||||||||||||||||||||||    
T  18437 agcttatatgaaaagaatttgactttattttatct 18471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 315 - 393
Target Start/End: Complemental strand, 26708758 - 26708680
Alignment:
Q  315 tattaaggtatggctacaacaactcaaagatgctgtttatgtgctcgatgatatccttgatgagtgttcaatcaagtct 393  Q
    ||||||||||||||||||| | |||||||||| ||| |||||||||||||| ||||||||||| || || |||||||||    
T  26708758 tattaaggtatggctacaagacctcaaagatgttgtatatgtgctcgatgacatccttgatgaatgctcgatcaagtct 26708680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 27121654 - 27121703
Alignment:
Q  130 acagcttatatgaaaagaatttgactttattttatctattattatagaaa 179  Q
    |||||||||||||||| |||||||||||||||||||  ||||||||||||    
T  27121654 acagcttatatgaaaacaatttgactttattttatcatttattatagaaa 27121703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 140 - 247
Target Start/End: Original strand, 22387979 - 22388092
Alignment:
Q  140 tgaaaagaatttgactttat---tttatctattattatagaaaataacatat--aaaagcacttacatgataagtgtctatgatataa--gcttaattaa 232  Q
    ||||||||||||||||||||   ||||||| || ||||||||| || | |||  | ||||||||| ||||||||||| |||| |||||  ||||||||||    
T  22387979 tgaaaagaatttgactttatacttttatcttttgttatagaaa-tagcttatccataagcacttaaatgataagtgtttatgttataagcgcttaattaa 22388077  T
Q  233 tttgtttatccaaac 247  Q
     ||||||||||||||    
T  22388078 gttgtttatccaaac 22388092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 12834997 - 12835054
Alignment:
Q  122 atcagcttacagcttatatgaaaagaatttgactttattttatctattattatagaaa 179  Q
    ||||||||| |||| ||||||||| |||||||||||||||||||| || || ||||||    
T  12834997 atcagcttatagctaatatgaaaacaatttgactttattttatcttttgttgtagaaa 12835054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 134 - 179
Target Start/End: Original strand, 39591539 - 39591584
Alignment:
Q  134 cttatatgaaaagaatttgactttattttatctattattatagaaa 179  Q
    |||||||||||| |||||||||||||||||||| || |||||||||    
T  39591539 cttatatgaaaacaatttgactttattttatcttttgttatagaaa 39591584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 133 - 178
Target Start/End: Complemental strand, 46825097 - 46825052
Alignment:
Q  133 gcttatatgaaaagaatttgactttattttatctattattatagaa 178  Q
    ||||||||||||| |||||||||||||||||||| || ||||||||    
T  46825097 gcttatatgaaaacaatttgactttattttatctttttttatagaa 46825052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 29290419 - 29290379
Alignment:
Q  46 ttatggaaacaacttatgacatgttcataagctattttcaa 86  Q
    |||||||||||||||||||||||| |||||||| |||||||    
T  29290419 ttatggaaacaacttatgacatgtccataagctgttttcaa 29290379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 76
Target Start/End: Complemental strand, 36538000 - 36537964
Alignment:
Q  40 gagaatttatggaaacaacttatgacatgttcataag 76  Q
    ||||| |||||||||||||||||||||||||||||||    
T  36538000 gagaacttatggaaacaacttatgacatgttcataag 36537964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 85
Target Start/End: Original strand, 36598340 - 36598379
Alignment:
Q  46 ttatggaaacaacttatgacatgttcataagctattttca 85  Q
    ||||||||||| ||||||||||||||||||||| ||||||    
T  36598340 ttatggaaacatcttatgacatgttcataagctgttttca 36598379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 179
Target Start/End: Original strand, 40689048 - 40689103
Alignment:
Q  124 cagcttacagcttatatgaaaagaatttgactttattttatctattattatagaaa 179  Q
    ||||||| |||||||||||||| ||||| |||||||||||||| ||  ||||||||    
T  40689048 cagcttatagcttatatgaaaataatttaactttattttatcttttgctatagaaa 40689103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 179
Target Start/End: Original strand, 48157190 - 48157237
Alignment:
Q  132 agcttatatgaaaagaatttgactttattttatctattattatagaaa 179  Q
    ||||||||| |||| ||||| |||||||||||||| ||||||||||||    
T  48157190 agcttatattaaaacaatttcactttattttatcttttattatagaaa 48157237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 175
Target Start/End: Complemental strand, 1417263 - 1417221
Alignment:
Q  133 gcttatatgaaaagaatttgactttattttatctattattata 175  Q
    ||||||||||||| |||||||||||||||||||| || |||||    
T  1417263 gcttatatgaaaacaatttgactttattttatcttttgttata 1417221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 83
Target Start/End: Original strand, 15740390 - 15740432
Alignment:
Q  41 agaatttatggaaacaacttatgacatgttcataagctatttt 83  Q
    |||| ||||| ||||||||||||||||||||||||||| ||||    
T  15740390 agaacttatgaaaacaacttatgacatgttcataagctgtttt 15740432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 166
Target Start/End: Complemental strand, 23918957 - 23918923
Alignment:
Q  132 agcttatatgaaaagaatttgactttattttatct 166  Q
    |||||||||||||| ||||||||||||||||||||    
T  23918957 agcttatatgaaaacaatttgactttattttatct 23918923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 98
Target Start/End: Original strand, 28520990 - 28521048
Alignment:
Q  40 gagaatttatggaaacaacttatgacatgttcataagctattttcaagtaatttccata 98  Q
    ||||| ||||||||||||||||||||||||  ||||||| ||||||  || ||||||||    
T  28520990 gagaacttatggaaacaacttatgacatgtctataagctgttttcagctattttccata 28521048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 166
Target Start/End: Complemental strand, 31002769 - 31002727
Alignment:
Q  124 cagcttacagcttatatgaaaagaatttgactttattttatct 166  Q
    ||||||| |||||||||||||| | ||||||||||||||||||    
T  31002769 cagcttatagcttatatgaaaatattttgactttattttatct 31002727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 179
Target Start/End: Complemental strand, 35536114 - 35536060
Alignment:
Q  125 agcttacagcttatatgaaaagaatttgactttattttatctattattatagaaa 179  Q
    |||||| | |||||||||||| ||||||||||||||||||||  | |||||||||    
T  35536114 agcttataacttatatgaaaacaatttgactttattttatcttatgttatagaaa 35536060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 85
Target Start/End: Complemental strand, 11048107 - 11048074
Alignment:
Q  52 aaacaacttatgacatgttcataagctattttca 85  Q
    ||||||||||||||||||||||||||| ||||||    
T  11048107 aaacaacttatgacatgttcataagctgttttca 11048074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 85
Target Start/End: Complemental strand, 19719098 - 19719053
Alignment:
Q  40 gagaatttatggaaacaacttatgacatgttcataagctattttca 85  Q
    ||||| ||||| |||||||||||||||||||||||| || ||||||    
T  19719098 gagaacttatgaaaacaacttatgacatgttcataaactgttttca 19719053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 189
Target Start/End: Original strand, 28340906 - 28340970
Alignment:
Q  124 cagcttacagcttatatgaaaagaatttgactttattttatctattattatagaaaataacatata 189  Q
    ||||||| ||||||||||| || |||||||||| |||| |||| |||||||| |||||| ||||||    
T  28340906 cagcttatagcttatatgacaacaatttgacttcatttcatcttttattata-aaaatagcatata 28340970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 179
Target Start/End: Original strand, 30456522 - 30456567
Alignment:
Q  134 cttatatgaaaagaatttgactttattttatctattattatagaaa 179  Q
    |||||||||||| |||||||||||||||||||| || || ||||||    
T  30456522 cttatatgaaaacaatttgactttattttatcttttgttttagaaa 30456567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 165
Target Start/End: Original strand, 47046178 - 47046211
Alignment:
Q  132 agcttatatgaaaagaatttgactttattttatc 165  Q
    |||||||||||||| |||||||||||||||||||    
T  47046178 agcttatatgaaaacaatttgactttattttatc 47046211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 3501039 - 3501079
Alignment:
Q  135 ttatatgaaaagaatttgactttattttatctattattata 175  Q
    |||||||||||  ||||||||||||||||||| ||||||||    
T  3501039 ttatatgaaaatgatttgactttattttatcttttattata 3501079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 135 - 179
Target Start/End: Original strand, 3802212 - 3802256
Alignment:
Q  135 ttatatgaaaagaatttgactttattttatctattattatagaaa 179  Q
    |||||||||||  |||||||||||||||| || ||||||||||||    
T  3802212 ttatatgaaaacgatttgactttattttaccttttattatagaaa 3802256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 125 - 189
Target Start/End: Complemental strand, 7623145 - 7623082
Alignment:
Q  125 agcttacagcttatatgaaaagaatttgactttattttatctattattatagaaaataacatata 189  Q
    |||||||||||||||| |||||| || |||||||||||| || || ||||| |||||||| ||||    
T  7623145 agcttacagcttatataaaaagagttggactttattttaccttttgttata-aaaataacttata 7623082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 9423577 - 9423617
Alignment:
Q  45 tttatggaaacaacttatgacatgttcataagctattttca 85  Q
    ||||||||||||| |||||||||||||||||| | ||||||    
T  9423577 tttatggaaacaatttatgacatgttcataagttgttttca 9423617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 122 - 166
Target Start/End: Complemental strand, 30134059 - 30134015
Alignment:
Q  122 atcagcttacagcttatatgaaaagaatttgactttattttatct 166  Q
    ||||||||| |||||||| ||||| || |||||||||||||||||    
T  30134059 atcagcttaaagcttatacgaaaacaagttgactttattttatct 30134015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 39539764 - 39539804
Alignment:
Q  45 tttatggaaacaacttatgacatgttcataagctattttca 85  Q
    |||| |||||||||||||||||||| |||||||| ||||||    
T  39539764 tttacggaaacaacttatgacatgtccataagctgttttca 39539804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 179
Target Start/End: Original strand, 43318597 - 43318645
Alignment:
Q  131 cagcttatatgaaaagaatttgactttattttatctattattatagaaa 179  Q
    |||||||||||| || |||||||||||||||||||  || |||||||||    
T  43318597 cagcttatatgataacaatttgactttattttatcatttgttatagaaa 43318645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 44615088 - 44615140
Alignment:
Q  46 ttatggaaacaacttatgacatgttcataagctattttcaagtaatttccata 98  Q
    ||||| |||||||||||||||||| || ||||| |||||| || |||||||||    
T  44615088 ttatgaaaacaacttatgacatgtccacaagctgttttcacgttatttccata 44615140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 44687016 - 44686976
Alignment:
Q  46 ttatggaaacaacttatgacatgttcataagctattttcaa 86  Q
    |||||||||||||||||||||||| ||| |||| |||||||    
T  44687016 ttatggaaacaacttatgacatgtccatgagctgttttcaa 44686976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 45078370 - 45078314
Alignment:
Q  40 gagaatttatggaaacaacttatgacatgttcataagctattttcaagtaatttcca 96  Q
    ||||| |||| |||| |||||||||||||| |||||||| ||||||| | |||||||    
T  45078370 gagaacttatagaaataacttatgacatgtccataagctgttttcaacttatttcca 45078314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 49 - 85
Target Start/End: Complemental strand, 48496900 - 48496864
Alignment:
Q  49 tggaaacaacttatgacatgttcataagctattttca 85  Q
    |||||||||||||||||||||| |||| |||||||||    
T  48496900 tggaaacaacttatgacatgttgataaactattttca 48496864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 49060545 - 49060493
Alignment:
Q  127 cttacagcttatatgaaaagaatttgactttattttatctattattatagaaa 179  Q
    |||| ||||||||| |||| |||||||||||||||||| | || |||||||||    
T  49060545 cttatagcttatataaaaataatttgactttattttattttttgttatagaaa 49060493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 248
Target Start/End: Complemental strand, 27573 - 27457
Alignment:
Q  135 ttatatgaaaagaatttgactttattttatctattattatagaaaataac--atataaaagcacttacatgataagtgtctatgatataagc--ttaatt 230  Q
    ||||||||||| ||||||||||||||||||||  | |||||| |||||||  ||| | |||||||||||||||||| |  |||| |||||||  ||| ||    
T  27573 ttatatgaaaacaatttgactttattttatcttctgttatag-aaataacttatacataagcacttacatgataagagcttatgctataagcgtttattt 27475  T
Q  231 aatttgtttatccaaaca 248  Q
    || |||||||||||||||    
T  27474 aagttgtttatccaaaca 27457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 323 - 390
Target Start/End: Complemental strand, 7100839 - 7100772
Alignment:
Q  323 tatggctacaacaactcaaagatgctgtttatgtgctcgatgatatccttgatgagtgttcaatcaag 390  Q
    ||||||| || |||||||||||||| || |||||||| ||||||||||||||||| ||||| ||||||    
T  7100839 tatggctgcagcaactcaaagatgcggtgtatgtgcttgatgatatccttgatgaatgttccatcaag 7100772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 334 - 389
Target Start/End: Original strand, 7580412 - 7580467
Alignment:
Q  334 caactcaaagatgctgtttatgtgctcgatgatatccttgatgagtgttcaatcaa 389  Q
    |||||||||||||| || |||||||| |||||||||||||||||||||| ||||||    
T  7580412 caactcaaagatgcggtgtatgtgcttgatgatatccttgatgagtgtttaatcaa 7580467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 53 - 96
Target Start/End: Complemental strand, 6262099 - 6262056
Alignment:
Q  53 aacaacttatgacatgttcataagctattttcaagtaatttcca 96  Q
    |||||||||||||||||||||||||||||||||| | |||||||    
T  6262099 aacaacttatgacatgttcataagctattttcaacttatttcca 6262056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 124 - 179
Target Start/End: Complemental strand, 49517078 - 49517023
Alignment:
Q  124 cagcttacagcttatatgaaaagaatttgactttattttatctattattatagaaa 179  Q
    ||||||| |||||| ||||||| |||||||||||||||||||| || |||||||||    
T  49517078 cagcttatagcttaaatgaaaacaatttgactttattttatcttttgttatagaaa 49517023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 52 - 86
Target Start/End: Complemental strand, 23445414 - 23445380
Alignment:
Q  52 aaacaacttatgacatgttcataagctattttcaa 86  Q
    |||||||||||||||||||||||||||||||||||    
T  23445414 aaacaacttatgacatgttcataagctattttcaa 23445380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 182
Target Start/End: Original strand, 27738250 - 27738300
Alignment:
Q  132 agcttatatgaaaagaatttgactttattttatctattattatagaaaata 182  Q
    |||||||||||||| |||||||||||||||||||| || || |||||||||    
T  27738250 agcttatatgaaaacaatttgactttattttatcttttgttgtagaaaata 27738300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 132 - 210
Target Start/End: Complemental strand, 4200229 - 4200150
Alignment:
Q  132 agcttatatgaaaagaatttgactttattttatctattattatagaaaataac--atataaaagcacttacatgataagtg 210  Q
    |||||||||||||| || ||||||||||||||||| || ||||| ||||||||  ||||| || |||||| ||||||||||    
T  4200229 agcttatatgaaaacaacttgactttattttatcttttgttata-aaaataacttatatataaacacttagatgataagtg 4200150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 15942725 - 15942762
Alignment:
Q  40 gagaatttatggaaacaacttatgacatgttcataagc 77  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  15942725 gagaatttatgaaaacaacttatgacatgttcataagc 15942762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 45234191 - 45234150
Alignment:
Q  138 tatgaaaagaatttgactttattttatctattattatagaaa 179  Q
    |||||||| |||||||||||||||||||| ||||||||||||    
T  45234191 tatgaaaataatttgactttattttatcttttattatagaaa 45234150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 179
Target Start/End: Original strand, 7218139 - 7218191
Alignment:
Q  127 cttacagcttatatgaaaagaatttgactttattttatctattattatagaaa 179  Q
    |||| |||||||||||||| ||||||||||||||||| || ||||||| ||||    
T  7218139 cttatagcttatatgaaaacaatttgactttattttaccttttattatggaaa 7218191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 15360899 - 15360847
Alignment:
Q  127 cttacagcttatatgaaaagaatttgactttattttatctattattatagaaa 179  Q
    |||| |||||||||||||| | |||||||||||||||||| || |||||||||    
T  15360899 cttatagcttatatgaaaacagtttgactttattttatcttttgttatagaaa 15360847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 35925776 - 35925724
Alignment:
Q  46 ttatggaaacaacttatgacatgttcataagctattttcaagtaatttccata 98  Q
    ||||| ||||| ||||||||||||||||||||| ||||||| | |||||||||    
T  35925776 ttatgaaaacagcttatgacatgttcataagctgttttcaacttatttccata 35925724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 43338207 - 43338163
Alignment:
Q  41 agaatttatggaaacaacttatgacatgttcataagctattttca 85  Q
    |||| ||||||||||| |||||||||||||||||| |||||||||    
T  43338207 agaacttatggaaacagcttatgacatgttcataatctattttca 43338163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 83
Target Start/End: Complemental strand, 6977008 - 6976973
Alignment:
Q  48 atggaaacaacttatgacatgttcataagctatttt 83  Q
    ||||||||||||||||||||||||||||||| ||||    
T  6977008 atggaaacaacttatgacatgttcataagctgtttt 6976973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 85
Target Start/End: Complemental strand, 15438049 - 15438010
Alignment:
Q  46 ttatggaaacaacttatgacatgttcataagctattttca 85  Q
    ||||||||||||||||||||||||||||||| || |||||    
T  15438049 ttatggaaacaacttatgacatgttcataagttactttca 15438010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 85
Target Start/End: Complemental strand, 17628685 - 17628646
Alignment:
Q  46 ttatggaaacaacttatgacatgttcataagctattttca 85  Q
    |||||||||||||||||||||||| |||||||| ||||||    
T  17628685 ttatggaaacaacttatgacatgtccataagctgttttca 17628646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 175
Target Start/End: Original strand, 28467377 - 28467420
Alignment:
Q  132 agcttatatgaaaagaatttgactttattttatctattattata 175  Q
    |||||||||||||| |||||||||||||||||||| || |||||    
T  28467377 agcttatatgaaaataatttgactttattttatcttttgttata 28467420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 179
Target Start/End: Original strand, 43372029 - 43372076
Alignment:
Q  132 agcttatatgaaaagaatttgactttattttatctattattatagaaa 179  Q
    ||||||| |||||| ||||||||| ||||||||||||| |||||||||    
T  43372029 agcttatgtgaaaataatttgactctattttatctattgttatagaaa 43372076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 179
Target Start/End: Original strand, 44032069 - 44032116
Alignment:
Q  132 agcttatatgaaaagaatttgactttattttatctattattatagaaa 179  Q
    |||||||||||||| ||||||||||||||||| || || |||||||||    
T  44032069 agcttatatgaaaacaatttgactttattttagcttttgttatagaaa 44032116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 166
Target Start/End: Complemental strand, 15361721 - 15361679
Alignment:
Q  124 cagcttacagcttatatgaaaagaatttgactttattttatct 166  Q
    ||||||| |||||||||||||| |||||||||||| |||||||    
T  15361721 cagcttatagcttatatgaaaataatttgactttactttatct 15361679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 98
Target Start/End: Complemental strand, 15515633 - 15515575
Alignment:
Q  40 gagaatttatggaaacaacttatgacatgttcataagctattttcaagtaatttccata 98  Q
    |||| |||||| ||||||||||||||||||  ||| ||||||||||| | |||||||||    
T  15515633 gagagtttatgaaaacaacttatgacatgtcaatacgctattttcaatttatttccata 15515575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 80
Target Start/End: Original strand, 17631086 - 17631120
Alignment:
Q  46 ttatggaaacaacttatgacatgttcataagctat 80  Q
    |||||||||||||||||||||||| ||||||||||    
T  17631086 ttatggaaacaacttatgacatgtccataagctat 17631120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 78
Target Start/End: Original strand, 19412575 - 19412613
Alignment:
Q  40 gagaatttatggaaacaacttatgacatgttcataagct 78  Q
    |||| ||||||||||||||||||||||||| ||||||||    
T  19412575 gagagtttatggaaacaacttatgacatgtccataagct 19412613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 1879095 - 1879144
Alignment:
Q  130 acagcttatatgaaaagaatttgactttattttatctattattatagaaa 179  Q
    |||||||||||||||| | ||||||||||||||||||  | |||||||||    
T  1879095 acagcttatatgaaaacattttgactttattttatcttctgttatagaaa 1879144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 85
Target Start/End: Original strand, 3070080 - 3070113
Alignment:
Q  52 aaacaacttatgacatgttcataagctattttca 85  Q
    ||||||||||||||||||||||||||| ||||||    
T  3070080 aaacaacttatgacatgttcataagctgttttca 3070113  T

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Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 83
Target Start/End: Original strand, 4699599 - 4699636
Alignment:
Q  46 ttatggaaacaacttatgacatgttcataagctatttt 83  Q
    ||||| ||||||||||||||||||||||||||| ||||    
T  4699599 ttatgaaaacaacttatgacatgttcataagctgtttt 4699636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 189
Target Start/End: Original strand, 7274001 - 7274065
Alignment:
Q  124 cagcttacagcttatatgaaaagaatttgactttattttatctattattatagaaaataacatata 189  Q
    ||||||| | ||| |||||||| ||||||||||||||| |||| || ||||| |||||||||||||    
T  7274001 cagcttataacttgtatgaaaacaatttgactttatttcatcttttgttata-aaaataacatata 7274065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 179
Target Start/End: Original strand, 14737781 - 14737822
Alignment:
Q  138 tatgaaaagaatttgactttattttatctattattatagaaa 179  Q
    |||||||| |||||||||||||||||||| || |||||||||    
T  14737781 tatgaaaacaatttgactttattttatcttttgttatagaaa 14737822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 37811944 - 37811887
Alignment:
Q  40 gagaatttatggaaacaacttatgacatgttcataagctattttcaagtaatttccat 97  Q
    ||||| ||||| ||||| |||||||||||||||||| || ||||||| | ||||||||    
T  37811944 gagaacttatgaaaacagcttatgacatgttcataaactgttttcaacttatttccat 37811887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 9656658 - 9656618
Alignment:
Q  124 cagcttacagcttatatgaaaagaatttgactttattttat 164  Q
    ||||||| |||||||||||||| ||||| ||||||||||||    
T  9656658 cagcttatagcttatatgaaaataatttaactttattttat 9656618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 135 - 179
Target Start/End: Complemental strand, 17628596 - 17628552
Alignment:
Q  135 ttatatgaaaagaatttgactttattttatctattattatagaaa 179  Q
    ||||||||||| |||||||||||| ||||||| ||| ||||||||    
T  17628596 ttatatgaaaacaatttgactttactttatcttttaatatagaaa 17628552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 163
Target Start/End: Original strand, 25006099 - 25006135
Alignment:
Q  127 cttacagcttatatgaaaagaatttgactttatttta 163  Q
    |||| |||||||||||||| |||||||||||||||||    
T  25006099 cttatagcttatatgaaaacaatttgactttatttta 25006135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 30371153 - 30371105
Alignment:
Q  127 cttacagcttatatgaaaagaatttgactttattttatctattattata 175  Q
    |||| |||||||||||||| ||||||| |||||||||||| || |||||    
T  30371153 cttatagcttatatgaaaacaatttgagtttattttatcttttgttata 30371105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 82
Target Start/End: Original strand, 30418166 - 30418202
Alignment:
Q  46 ttatggaaacaacttatgacatgttcataagctattt 82  Q
    |||||||||||||||||||||||| |||||| |||||    
T  30418166 ttatggaaacaacttatgacatgtccataagttattt 30418202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 139 - 179
Target Start/End: Original strand, 40357963 - 40358003
Alignment:
Q  139 atgaaaagaatttgactttattttatctattattatagaaa 179  Q
    ||||||| ||||||||||||||||||| ||| |||||||||    
T  40357963 atgaaaacaatttgactttattttatccattgttatagaaa 40358003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 46 - 83
Target Start/End: Complemental strand, 4550833 - 4550796
Alignment:
Q  46 ttatggaaacaacttatgacatgttcataagctatttt 83  Q
    ||||||||||||||||||||||||||||||||||||||    
T  4550833 ttatggaaacaacttatgacatgttcataagctatttt 4550796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 1742016 - 1742068
Alignment:
Q  46 ttatggaaacaacttatgacatgttcataagctattttcaagtaatttccata 98  Q
    |||||||||||||||||||||||| |||||||||| ||||| | |||||||||    
T  1742016 ttatggaaacaacttatgacatgtgcataagctatcttcaacttatttccata 1742068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 40 - 85
Target Start/End: Original strand, 43529836 - 43529881
Alignment:
Q  40 gagaatttatggaaacaacttatgacatgttcataagctattttca 85  Q
    ||||||||||| ||||| |||||| |||||||||||||||||||||    
T  43529836 gagaatttatgaaaacagcttatgccatgttcataagctattttca 43529881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 2226983 - 2227023
Alignment:
Q  45 tttatggaaacaacttatgacatgttcataagctattttca 85  Q
    ||||||||||||||||||| ||||||||| |||||||||||    
T  2226983 tttatggaaacaacttatggcatgttcattagctattttca 2227023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 126 - 178
Target Start/End: Complemental strand, 33256746 - 33256694
Alignment:
Q  126 gcttacagcttatatgaaaagaatttgactttattttatctattattatagaa 178  Q
    ||||| || ||||||||||| | ||||||||||||||||||||| ||||||||    
T  33256746 gcttatagtttatatgaaaacagtttgactttattttatctattgttatagaa 33256694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 34652020 - 34652072
Alignment:
Q  46 ttatggaaacaacttatgacatgttcataagctattttcaagtaatttccata 98  Q
    |||| ||||||||||||||||||| |||||||| ||||||| | |||||||||    
T  34652020 ttatagaaacaacttatgacatgtccataagctgttttcaacttatttccata 34652072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 179
Target Start/End: Original strand, 1493583 - 1493630
Alignment:
Q  132 agcttatatgaaaagaatttgactttattttatctattattatagaaa 179  Q
    |||||||||||||| || | |||||||||||||||||| |||||||||    
T  1493583 agcttatatgaaaacaactagactttattttatctattgttatagaaa 1493630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 166
Target Start/End: Complemental strand, 11513903 - 11513864
Alignment:
Q  127 cttacagcttatatgaaaagaatttgactttattttatct 166  Q
    |||| |||||||||||||| ||||||||||||||||||||    
T  11513903 cttatagcttatatgaaaacaatttgactttattttatct 11513864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 179
Target Start/End: Original strand, 17952771 - 17952818
Alignment:
Q  132 agcttatatgaaaagaatttgactttattttatctattattatagaaa 179  Q
    |||||||||||||| | |||||||||||||||||| || |||||||||    
T  17952771 agcttatatgaaaatagtttgactttattttatcttttgttatagaaa 17952818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 179
Target Start/End: Complemental strand, 43173222 - 43173176
Alignment:
Q  132 agcttatatgaaaagaatttgactttattttatctattattatagaaa 179  Q
    |||||||||||||| ||||||||||||||||||| | |||||||||||    
T  43173222 agcttatatgaaaataatttgactttattttatc-aatattatagaaa 43173176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 99
Target Start/End: Original strand, 43530089 - 43530148
Alignment:
Q  40 gagaatttatggaaacaacttatgacatgttcataagctattttcaagtaatttccatag 99  Q
    ||||| ||||| |||||  |||||||||||||| ||||||||||||| | ||||||||||    
T  43530089 gagaacttatgaaaacagattatgacatgttcacaagctattttcaacttatttccatag 43530148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 179
Target Start/End: Original strand, 656832 - 656894
Alignment:
Q  117 atgatatcagcttacagcttatatgaaaagaatttgactttattttatctattattatagaaa 179  Q
    |||| |||| ||||||||||||| ||||| ||||||| | |||||||||| || |||||||||    
T  656832 atgaaatcaacttacagcttatacgaaaacaatttgattatattttatcttttgttatagaaa 656894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 184
Target Start/End: Complemental strand, 3458659 - 3458606
Alignment:
Q  130 acagcttatatgaaaagaatttgactttattttatctattattatagaaaataac 184  Q
    |||||||||||||||| | |||||||||||||||||| || ||||| ||||||||    
T  3458659 acagcttatatgaaaaaagtttgactttattttatcttttgttata-aaaataac 3458606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 98
Target Start/End: Original strand, 41042000 - 41042058
Alignment:
Q  40 gagaatttatggaaacaacttatgacatgttcataagctattttcaagtaatttccata 98  Q
    |||||||||| |||||||||||| |||||| ||| |||| ||||||| | |||||||||    
T  41042000 gagaatttatagaaacaacttattacatgtccatcagctgttttcaacttatttccata 41042058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 1939323 - 1939368
Alignment:
Q  53 aacaacttatgacatgttcataagctattttcaagtaatttccata 98  Q
    ||||||||||||||||| |||||||| ||||||| | |||||||||    
T  1939323 aacaacttatgacatgtccataagctgttttcaacttatttccata 1939368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 107
Target Start/End: Complemental strand, 10285946 - 10285885
Alignment:
Q  46 ttatggaaacaacttatgacatgttcataagctattttcaagtaatttccatagattctcta 107  Q
    ||||| ||| |||||||||||||| |||||||| ||||||| | |||||||||  |||||||    
T  10285946 ttatgaaaataacttatgacatgtccataagctgttttcaacttatttccataagttctcta 10285885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 74
Target Start/End: Complemental strand, 14666639 - 14666606
Alignment:
Q  41 agaatttatggaaacaacttatgacatgttcata 74  Q
    ||||| ||||||||||||||||||||||||||||    
T  14666639 agaatatatggaaacaacttatgacatgttcata 14666606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 83
Target Start/End: Complemental strand, 15120269 - 15120232
Alignment:
Q  46 ttatggaaacaacttatgacatgttcataagctatttt 83  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  15120269 ttatggaaacaacttatgacatgttcattagctgtttt 15120232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 15377851 - 15377810
Alignment:
Q  47 tatggaaacaacttatgacatgttcataagctattttcaagt 88  Q
    |||||||||||||||||||| || ||||||||||||| ||||    
T  15377851 tatggaaacaacttatgacacgtccataagctatttttaagt 15377810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 85
Target Start/End: Complemental strand, 33503099 - 33503054
Alignment:
Q  40 gagaatttatggaaacaacttatgacatgttcataagctattttca 85  Q
    ||||||||||| || || |||||||||| |||||||||||||||||    
T  33503099 gagaatttatgaaatcagcttatgacattttcataagctattttca 33503054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 11344754 - 11344794
Alignment:
Q  46 ttatggaaacaacttatgacatgttcataagctattttcaa 86  Q
    |||||||||||||||||||||||| ||||| || |||||||    
T  11344754 ttatggaaacaacttatgacatgtccataaactgttttcaa 11344794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 25609801 - 25609749
Alignment:
Q  127 cttacagcttatatgaaaagaatttgactttattttatctattattatagaaa 179  Q
    |||| |||||||| ||||| || ||||||||||||||||| || |||||||||    
T  25609801 cttatagcttatacgaaaataaattgactttattttatcttttcttatagaaa 25609749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 28039312 - 28039368
Alignment:
Q  42 gaatttatggaaacaacttatgacatgttcataagctattttcaagtaatttccata 98  Q
    ||||||||| |||||| ||||||| |||||||||||| ||||||  | |||||||||    
T  28039312 gaatttatgaaaacaagttatgacttgttcataagctgttttcagcttatttccata 28039368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 179
Target Start/End: Original strand, 31740024 - 31740076
Alignment:
Q  127 cttacagcttatatgaaaagaatttgactttattttatctattattatagaaa 179  Q
    |||| |||||||||||||| | |||||||||||||||||| |  |||||||||    
T  31740024 cttatagcttatatgaaaatagtttgactttattttatctttagttatagaaa 31740076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 32821896 - 32821856
Alignment:
Q  45 tttatggaaacaacttatgacatgttcataagctattttca 85  Q
    ||||| ||||||||||||||||||| |||||||| ||||||    
T  32821896 tttatagaaacaacttatgacatgtccataagctgttttca 32821856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 132 - 164
Target Start/End: Complemental strand, 33944605 - 33944573
Alignment:
Q  132 agcttatatgaaaagaatttgactttattttat 164  Q
    |||||||||||||| ||||||||||||||||||    
T  33944605 agcttatatgaaaacaatttgactttattttat 33944573  T

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Target: scaffold0085 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 175
Target Start/End: Original strand, 34072 - 34110
Alignment:
Q  137 atatgaaaagaatttgactttattttatctattattata 175  Q
    ||||||||| |||||||||||||||||||| ||||||||    
T  34072 atatgaaaataatttgactttattttatcttttattata 34110  T

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Target: scaffold0015 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 124 - 164
Target Start/End: Original strand, 69005 - 69045
Alignment:
Q  124 cagcttacagcttatatgaaaagaatttgactttattttat 164  Q
    |||||||  ||||||||||||| ||||||||||||||||||    
T  69005 cagcttattgcttatatgaaaataatttgactttattttat 69045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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