View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9482H-LTR4-TNT-insertion-2 (Length: 143)
Name: F9482H-LTR4-TNT-insertion-2
Description: F9482H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9482H-LTR4-TNT-insertion-2 |
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Alignment Details
Target: chr6 (Bit Score: 126; Significance: 2e-65; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 2e-65
Query Start/End: Original strand, 8 - 133
Target Start/End: Original strand, 7588697 - 7588822
Alignment:
| Q |
8 |
caaaggagctatgattcctacctcaaaaactattttttccatgacatttatgaagctcatattgtcatctatagcacatacatctcttcggttgaaagca |
107 |
Q |
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| T |
7588697 |
caaaggagctatgattcctacctcaaaaactattttttccatgacatttatgaagctcatattgtcatctatagcacatacatctcttcggttgaaagca |
7588796 |
T |
|
| Q |
108 |
agattactatttcttatattgcatta |
133 |
Q |
| |
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|||||||||||||||||||||||||| |
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|
| T |
7588797 |
agattactatttcttatattgcatta |
7588822 |
T |
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